Factsheet for Bra001972.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46213	Canola	nucleus	73.78	99.18
CDX71276	Canola	nucleus	98.78	94.19
Solyc10g051390.1.1	Tomato	nucleus	54.27	75.42
Bra030284.1-P	Field mustard	nucleus	74.39	72.62
VIT_03s0063g02610.t01	Wine grape	nucleus	71.34	72.22
Bra010693.1-P	Field mustard	nucleus	71.95	71.52
GSMUA_Achr7P27650_001	Banana	nucleus	57.32	70.68
Solyc10g051380.1.1	Tomato	nucleus	55.49	70.0
Bra011869.1-P	Field mustard	cytosol	68.9	69.75
GSMUA_Achr8P05200_001	Banana	cytosol	65.24	69.03
Zm00001d041246_P001	Maize	nucleus	60.98	68.97
Bra031210.1-P	Field mustard	nucleus	69.51	67.86
Zm00001d031168_P001	Maize	plastid	64.02	67.74
Os12t0632000-01	Rice	nucleus	66.46	67.28
EES16438	Sorghum	nucleus	67.68	67.27
KRH29453	Soybean	nucleus	57.32	67.14
TraesCS4B01G020300.1	Wheat	extracellular	66.46	66.87
PGSC0003DMT400084290	Potato	nucleus	67.68	66.87
PGSC0003DMT400084258	Potato	nucleus	67.68	66.87
PGSC0003DMT400083014	Potato	nucleus	67.68	66.87
TraesCS5B01G013200.1	Wheat	nucleus	67.68	66.47
TraesCS4A01G293000.1	Wheat	plastid	65.24	66.05
KRH29452	Soybean	nucleus	62.8	66.03
PGSC0003DMT400084266	Potato	extracellular	64.63	65.84
GSMUA_Achr4P14550_001	Banana	nucleus	63.41	65.82
TraesCS4D01G018500.1	Wheat	nucleus	66.46	65.66
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	63.41	65.41
PGSC0003DMT400001879	Potato	cytosol	69.51	64.77
TraesCS5A01G015000.1	Wheat	nucleus	67.07	64.71
Solyc01g109660.2.1	Tomato	extracellular	68.9	64.57
KRH51528	Soybean	nucleus	71.34	64.29
TraesCS5D01G020900.1	Wheat	plastid	67.07	63.22
KRH29451	Soybean	nucleus	65.85	63.16
KXG37870	Sorghum	nucleus	65.24	62.94
TraesCS6D01G199100.1	Wheat	nucleus	59.15	62.58
GSMUA_Achr3P30570_001	Banana	plasma membrane	64.63	62.35
KRH29454	Soybean	nucleus	64.63	62.35
TraesCS6A01G216500.1	Wheat	nucleus	61.59	62.35
TraesCS6B01G246400.1	Wheat	nucleus	60.98	61.73
HORVU6Hr1G055440.1	Barley	nucleus	60.37	61.11
KRH60842	Soybean	mitochondrion	68.29	60.54
HORVU5Hr1G002150.1	Barley	nucleus	54.27	51.45
Os03t0670700-01	Rice	nucleus	57.93	48.47
Bra013997.1-P	Field mustard	mitochondrion	42.07	47.59
HORVU5Hr1G089190.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	28.05	46.46
Bra037056.1-P	Field mustard	mitochondrion	40.85	44.67
Bra025674.1-P	Field mustard	mitochondrion	34.76	39.31
Bra014000.1-P	Field mustard	mitochondrion	48.17	35.59
Bra002976.1-P	Field mustard	mitochondrion	20.12	31.73
Bra020279.1-P	Field mustard	mitochondrion	19.51	29.09
Bra008142.1-P	Field mustard	mitochondrion	45.73	28.41
Bra032933.1-P	Field mustard	nucleus	42.07	28.4
Bra025205.1-P	Field mustard	nucleus	39.63	28.02
Bra015926.1-P	Field mustard	mitochondrion	48.17	27.72
Bra005189.1-P	Field mustard	plastid	23.78	27.08
Bra008100.1-P	Field mustard	cytosol	13.41	26.83
Bra035944.1-P	Field mustard	plastid	42.68	26.62
Bra028739.1-P	Field mustard	mitochondrion	23.17	26.03
Bra012986.1-P	Field mustard	mitochondrion	45.73	24.59
Bra029692.1-P	Field mustard	mitochondrion	20.73	23.78
Bra029020.1-P	Field mustard	plastid	21.95	23.53
Bra000516.1-P	Field mustard	mitochondrion	17.07	20.9
Bra005798.1-P	Field mustard	nucleus	38.41	20.59
Bra008020.1-P	Field mustard	endoplasmic reticulum	25.61	20.19
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	18.29	11.67
Bra031244.1-P	Field mustard	plastid	20.12	8.85

Protein Annotations

EnsemblPlants:Bra001972.1	EnsemblPlants:Bra001972.1-P	EnsemblPlantsGene:Bra001972	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45429	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00025444B6	UniProt:M4CCP2	MapMan:16.7.2	:	:

Description

AT4G39260 (E=3e-032) CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA10:-:12601666..12602362

Molecular Weight (calculated)

16741.8 Da

IEP (calculated)

4.837

GRAVY (calculated)

-0.934

Length

164 amino acids

Sequence
(BLAST)

001: MDSAESEYRC FVGGLAWATD EQSLGRTFSE FGEVLDSKII IDRETGRSKG FGFVTFKDEE SMRAAIERMN GQELDGRNIT VNEAQARSSR GGNGGGYNRG
101: GGGYGGGGYG SGGGGYGGRR DQGGYGGGGG GYGGGGYGGG RREGGYGGGD GGYGGRSDSG NWRE

Best Arabidopsis Sequence Match ( AT4G39260.3 )
(BLAST)

1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW

Arabidopsis Description

RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.