Factsheet for Bra008100.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82066	Canola	cytosol, nucleus, plastid	69.51	59.38
Solyc09g011210.2.1	Tomato	plastid	53.66	33.33
AT1G73530.1	Thale cress	plastid	67.07	30.39
Bra002976.1-P	Field mustard	mitochondrion	35.37	27.88
KRH38934	Soybean	plastid	50.0	26.62
GSMUA_Achr5P15860_001	Banana	plastid	54.88	26.47
PGSC0003DMT400022733	Potato	plastid	52.44	26.38
KXG26990	Sorghum	plastid	45.12	25.17
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	76.83	24.51
Zm00001d026016_P002	Maize	plastid	43.9	24.0
KRH09475	Soybean	plastid	52.44	23.89
VIT_17s0053g00760.t01	Wine grape	plastid	39.02	20.13
Bra020279.1-P	Field mustard	mitochondrion	25.61	19.09
Bra029020.1-P	Field mustard	plastid	34.15	18.3
Bra005189.1-P	Field mustard	plastid	30.49	17.36
Bra013997.1-P	Field mustard	mitochondrion	26.83	15.17
Bra028739.1-P	Field mustard	mitochondrion	26.83	15.07
Bra037056.1-P	Field mustard	mitochondrion	25.61	14.0
Bra031210.1-P	Field mustard	nucleus	28.05	13.69
Bra000516.1-P	Field mustard	mitochondrion	21.95	13.43
Bra001972.1-P	Field mustard	nucleus	26.83	13.41
Bra010693.1-P	Field mustard	nucleus	26.83	13.33
Bra030284.1-P	Field mustard	nucleus	26.83	13.1
Bra011869.1-P	Field mustard	cytosol	25.61	12.96
Bra029692.1-P	Field mustard	mitochondrion	20.73	11.89
Bra025674.1-P	Field mustard	mitochondrion	18.29	10.34
Bra014000.1-P	Field mustard	mitochondrion	26.83	9.91
Bra025205.1-P	Field mustard	nucleus	24.39	8.62
Bra032933.1-P	Field mustard	nucleus	24.39	8.23
Bra008142.1-P	Field mustard	mitochondrion	24.39	7.58
Bra008020.1-P	Field mustard	endoplasmic reticulum	18.29	7.21
Bra015926.1-P	Field mustard	mitochondrion	23.17	6.67
Bra031244.1-P	Field mustard	plastid	28.05	6.17
Bra035944.1-P	Field mustard	plastid	19.51	6.08
Bra005798.1-P	Field mustard	nucleus	21.95	5.88
Bra012986.1-P	Field mustard	mitochondrion	19.51	5.25
Os04t0583800-01	Rice	plastid	3.66	2.54

Protein Annotations

EnsemblPlants:Bra008100.1	EnsemblPlants:Bra008100.1-P	EnsemblPlantsGene:Bra008100	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45502	PFAM:PF00076	PFscan:PS50102	SUPFAM:SSF54928	UniParc:UPI00025455AE
UniProt:M4CV54	MapMan:35.1	:	:	:	:

Description

AT1G73530 (E=3e-026) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA02:-:13131387..13131738

Molecular Weight (calculated)

9506.4 Da

IEP (calculated)

10.099

GRAVY (calculated)

-0.660

Length

82 amino acids

Sequence
(BLAST)

1: MDKVANRPRG FAFLRYETEE ESMKAIEGMH GKFLDGRVIF VEEAKPMSDI QRAKPRSDFN RAQTKRRVPF APGSYFDHVS IL

Best Arabidopsis Sequence Match ( AT1G73530.1 )
(BLAST)

001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W

Arabidopsis Description

ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.