Factsheet for Bra025205.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83617	Canola	nucleus	99.14	99.14
CDY13632	Canola	nucleus	100.0	97.07
Bra032933.1-P	Field mustard	nucleus	93.1	88.89
AT3G26420.1	Thale cress	nucleus	87.5	82.86
KRH42209	Soybean	endoplasmic reticulum	55.17	72.73
PGSC0003DMT400076497	Potato	nucleus	62.07	70.24
KRH58335	Soybean	nucleus	61.64	68.75
KXG37189	Sorghum	nucleus	57.76	67.34
PGSC0003DMT400045627	Potato	nucleus	61.64	66.82
Os03t0836200-03	Rice	nucleus	58.62	66.34
Zm00001d034768_P005	Maize	nucleus	58.19	65.85
KXG24163	Sorghum	nucleus	57.76	61.47
TraesCS4A01G355700.1	Wheat	nucleus	54.74	60.19
TraesCS5D01G516500.1	Wheat	nucleus	57.33	59.91
TraesCS5B01G516400.1	Wheat	nucleus	56.47	59.82
Solyc10g047130.1.1	Tomato	nucleus	61.21	59.41
TraesCS7D01G323600.1	Wheat	nucleus	55.17	55.65
TraesCS7B01G227500.2	Wheat	nucleus	55.17	55.65
HORVU7Hr1G078140.5	Barley	nucleus	55.17	55.65
TraesCS7A01G326800.1	Wheat	nucleus	55.6	54.43
VIT_18s0166g00180.t01	Wine grape	mitochondrion	61.64	50.18
Solyc01g104840.2.1	Tomato	nucleus	46.98	48.88
Bra031210.1-P	Field mustard	nucleus	32.76	45.24
Bra030284.1-P	Field mustard	nucleus	31.9	44.05
HORVU5Hr1G118010.1	Barley	mitochondrion, nucleus	58.19	43.27
Bra011869.1-P	Field mustard	cytosol	29.74	42.59
Bra010693.1-P	Field mustard	nucleus	30.17	42.42
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	29.74	41.07
Bra001972.1-P	Field mustard	nucleus	28.02	39.63
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	34.48	39.02
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	30.17	36.65
Bra037056.1-P	Field mustard	mitochondrion	22.41	34.67
Bra013997.1-P	Field mustard	mitochondrion	21.12	33.79
Bra002976.1-P	Field mustard	mitochondrion	14.22	31.73
Bra025674.1-P	Field mustard	mitochondrion	19.83	31.72
Bra005798.1-P	Field mustard	nucleus	36.21	27.45
Bra020279.1-P	Field mustard	mitochondrion	12.5	26.36
Bra028739.1-P	Field mustard	mitochondrion	15.95	25.34
Bra029692.1-P	Field mustard	mitochondrion	15.52	25.17
Bra014000.1-P	Field mustard	mitochondrion	23.71	24.77
Bra008100.1-P	Field mustard	cytosol	8.62	24.39
Bra005189.1-P	Field mustard	plastid	15.09	24.31
Bra029020.1-P	Field mustard	plastid	14.66	22.22
Bra012986.1-P	Field mustard	mitochondrion	27.59	20.98
Bra035944.1-P	Field mustard	plastid	23.71	20.91
Bra008142.1-P	Field mustard	mitochondrion	23.28	20.45
Bra015926.1-P	Field mustard	mitochondrion	24.57	20.0
Bra000516.1-P	Field mustard	mitochondrion	11.21	19.4
Bra008020.1-P	Field mustard	endoplasmic reticulum	16.81	18.75
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	12.5	11.28
Bra031244.1-P	Field mustard	plastid	16.38	10.19

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra025205	EnsemblPlants:Bra025205.1	EnsemblPlants:Bra025205.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	UniProt:M4E8U9	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000253F69A	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

AT3G26420 (E=2e-051) ATRZ-1A | ATRZ-1A; RNA binding / nucleotide binding

Coordinates

chrA06:-:22796907..22797980

Molecular Weight (calculated)

25525.0 Da

IEP (calculated)

9.057

GRAVY (calculated)

-1.374

Length

232 amino acids

Sequence
(BLAST)

001: MSEEVEYRCF IGGLAWSTSD RGLRDAFEKY GHLLEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPLQGGS GRDHDGDRSR
101: DRGYDRDRSR PSGGRGSGGG DCFKCGKPGH FARECPDESG RGGGGRYSSR DDRYGAKDDR YSSKDDRYSA KDDRYGAKED RYGRDGGRDR YGPDRNGDRS
201: GGRSRDGGSR GGPGGERHSR APYDRPRTGG FH

Best Arabidopsis Sequence Match ( AT3G26420.1 )
(BLAST)

001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH

Arabidopsis Description

RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.