Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g047130.1.1 | Tomato | nucleus | 98.6 | 88.28 |
| PGSC0003DMT400076497 | Potato | nucleus | 76.64 | 80.0 |
| KRH42209 | Soybean | endoplasmic reticulum | 61.22 | 74.43 |
| KXG37189 | Sorghum | nucleus | 66.82 | 71.86 |
| KRH58335 | Soybean | nucleus | 69.63 | 71.63 |
| Os03t0836200-03 | Rice | nucleus | 67.76 | 70.73 |
| Zm00001d034768_P005 | Maize | nucleus | 66.82 | 69.76 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 63.08 | 63.98 |
| Bra025205.1-P | Field mustard | nucleus | 66.82 | 61.64 |
| KXG24163 | Sorghum | nucleus | 62.62 | 61.47 |
| TraesCS5D01G516500.1 | Wheat | nucleus | 63.55 | 61.26 |
| CDX83617 | Canola | nucleus | 66.36 | 61.21 |
| TraesCS5B01G516400.1 | Wheat | nucleus | 62.62 | 61.19 |
| CDY13632 | Canola | nucleus | 67.29 | 60.25 |
| Bra032933.1-P | Field mustard | nucleus | 67.76 | 59.67 |
| CDY48990 | Canola | nucleus | 67.76 | 59.67 |
| CDY52166 | Canola | nucleus | 65.89 | 58.02 |
| AT3G26420.1 | Thale cress | nucleus | 64.95 | 56.73 |
| TraesCS7B01G227500.2 | Wheat | nucleus | 60.75 | 56.52 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 60.75 | 56.52 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 60.75 | 56.52 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 60.75 | 54.85 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 72.9 | 54.74 |
| PGSC0003DMT400084266 | Potato | extracellular | 33.64 | 44.72 |
| PGSC0003DMT400084290 | Potato | nucleus | 34.58 | 44.58 |
| PGSC0003DMT400084258 | Potato | nucleus | 34.58 | 44.58 |
| PGSC0003DMT400083014 | Potato | nucleus | 34.58 | 44.58 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 64.49 | 44.23 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 33.64 | 42.86 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 38.78 | 40.49 |
| PGSC0003DMT400001879 | Potato | cytosol | 32.24 | 39.2 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 34.11 | 38.22 |
| PGSC0003DMT400040748 | Potato | mitochondrion | 22.9 | 33.79 |
| PGSC0003DMT400053017 | Potato | mitochondrion, plastid | 23.36 | 32.89 |
| PGSC0003DMT400001786 | Potato | nucleus | 10.75 | 32.86 |
| PGSC0003DMT400043581 | Potato | nucleus | 40.19 | 31.73 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 17.76 | 29.46 |
| PGSC0003DMT400028726 | Potato | nucleus | 20.09 | 29.45 |
| PGSC0003DMT400079815 | Potato | nucleus | 37.38 | 25.16 |
| PGSC0003DMT400049607 | Potato | plastid | 18.22 | 24.84 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 28.97 | 23.57 |
| PGSC0003DMT400070114 | Potato | endoplasmic reticulum, extracellular | 16.36 | 23.49 |
| PGSC0003DMT400064758 | Potato | mitochondrion | 25.7 | 21.91 |
| PGSC0003DMT400056141 | Potato | mitochondrion | 13.55 | 19.59 |
| PGSC0003DMT400003685 | Potato | nucleus | 26.17 | 18.48 |
| PGSC0003DMT400022733 | Potato | plastid | 13.08 | 17.18 |
| PGSC0003DMT400050134 | Potato | plastid | 16.36 | 8.75 |
Protein Annotations
| EntrezGene:102593310 | MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 |
| UniProt:M1BHY6 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | EnsemblPlantsGene:PGSC0003DMG400017696 | PGSC:PGSC0003DMG400017696 |
| EnsemblPlants:PGSC0003DMT400045627 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR45429 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI000295F9D6 | RefSeq:XP_006341831.1 |
| InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : | : |
Description
RNA binding protein RZ-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400017696]
Coordinates
chr10:+:28422043..28427485
Molecular Weight (calculated)
23212.3 Da
IEP (calculated)
9.129
GRAVY (calculated)
-1.359
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEDDEYRCF IGNLSWSTSD RGLKDAFRKF GNLLDAKVVV DKFSGRSKGF GFVTFDEKKA MEEAIDAMNG MDLDGRAITV DKAQPQQSSG RDYDSNRPHD
101: RDRDRGRDRS RSDREYGGGR GSGGGECFKC GKPGHFAREC PSEEGRGGRY GGRDDRYGGG GGGGSRGSGY GPERNGDRFG NRSSRDGGGH GGGERYNRDR
201: SGPYDRRGSG SRAG
101: RDRDRGRDRS RSDREYGGGR GSGGGECFKC GKPGHFAREC PSEEGRGGRY GGRDDRYGGG GGGGSRGSGY GPERNGDRFG NRSSRDGGGH GGGERYNRDR
201: SGPYDRRGSG SRAG
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Arabidopsis Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.