Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13632 | Canola | nucleus | 85.71 | 87.87 |
| CDX83617 | Canola | nucleus | 82.86 | 87.5 |
| Bra025205.1-P | Field mustard | nucleus | 82.86 | 87.5 |
| CDY52166 | Canola | nucleus | 82.04 | 82.72 |
| CDY48990 | Canola | nucleus | 82.04 | 82.72 |
| Bra032933.1-P | Field mustard | nucleus | 82.04 | 82.72 |
| KRH42209 | Soybean | endoplasmic reticulum | 51.02 | 71.02 |
| PGSC0003DMT400076497 | Potato | nucleus | 56.73 | 67.8 |
| KRH58335 | Soybean | nucleus | 56.33 | 66.35 |
| KXG37189 | Sorghum | nucleus | 53.06 | 65.33 |
| PGSC0003DMT400045627 | Potato | nucleus | 56.73 | 64.95 |
| Zm00001d034768_P005 | Maize | nucleus | 53.06 | 63.41 |
| Os03t0836200-03 | Rice | nucleus | 53.06 | 63.41 |
| KXG24163 | Sorghum | nucleus | 52.24 | 58.72 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 50.2 | 58.29 |
| Solyc10g047130.1.1 | Tomato | nucleus | 56.33 | 57.74 |
| TraesCS5B01G516400.1 | Wheat | nucleus | 51.43 | 57.53 |
| TraesCS5D01G516500.1 | Wheat | nucleus | 51.84 | 57.21 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 51.43 | 54.78 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 51.43 | 54.78 |
| TraesCS7B01G227500.2 | Wheat | nucleus | 51.43 | 54.78 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 51.43 | 53.16 |
| Solyc01g104840.2.1 | Tomato | nucleus | 44.49 | 48.88 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 56.73 | 48.77 |
| AT2G21660.1 | Thale cress | nucleus | 30.61 | 42.61 |
| HORVU5Hr1G118010.1 | Barley | mitochondrion, nucleus | 52.65 | 41.35 |
| AT4G39260.1 | Thale cress | nucleus | 28.16 | 40.83 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 26.94 | 39.29 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 32.65 | 39.02 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 28.98 | 37.17 |
| AT4G13850.1 | Thale cress | mitochondrion | 23.27 | 36.08 |
| AT1G18630.1 | Thale cress | mitochondrion | 22.04 | 34.84 |
| AT4G13860.1 | Thale cress | cytosol | 12.24 | 34.48 |
| AT3G23830.1 | Thale cress | mitochondrion, plastid | 17.55 | 31.62 |
| AT5G59865.1 | Thale cress | mitochondrion, plastid | 13.47 | 29.2 |
| AT1G60650.2 | Thale cress | nucleus | 33.88 | 28.42 |
| AT3G46020.1 | Thale cress | mitochondrion | 11.43 | 27.45 |
| AT5G06210.1 | Thale cress | mitochondrion | 16.33 | 27.4 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 33.47 | 26.45 |
| AT3G08000.1 | Thale cress | plastid | 14.29 | 24.48 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 16.33 | 23.95 |
| AT2G27330.1 | Thale cress | mitochondrion | 10.2 | 21.55 |
| AT5G54580.1 | Thale cress | mitochondrion, plastid | 13.47 | 21.15 |
| AT5G61030.1 | Thale cress | mitochondrion | 25.71 | 20.39 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 22.86 | 19.38 |
| AT5G59860.1 | Thale cress | nucleus | 10.61 | 16.56 |
| AT1G73530.1 | Thale cress | plastid | 11.84 | 16.02 |
| AT3G20930.2 | Thale cress | plastid | 15.1 | 9.76 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | EntrezGene:822246 | ProteinID:AEE77156.1 | EMBL:AF424613 |
| EMBL:AK221725 | EMBL:AK227088 | ArrayExpress:AT3G26420 | EnsemblPlantsGene:AT3G26420 | RefSeq:AT3G26420 | TAIR:AT3G26420 |
| RefSeq:AT3G26420-TAIR-G | EnsemblPlants:AT3G26420.1 | TAIR:AT3G26420.1 | Symbol:ATRZ-1A | EMBL:AY054613 | EMBL:AY072457 |
| ProteinID:BAB02203.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008270 | GO:GO:0009409 |
| GO:GO:0009628 | GO:GO:0046872 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | RefSeq:NP_189273.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF00098 | PO:PO:0000003 | PO:PO:0000293 | PO:PO:0025195 |
| PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR45429 | UniProt:Q9LIN3 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | UniParc:UPI00000A0D2B | InterPro:Znf_CCHC |
| InterPro:Znf_CCHC_sf | SEG:seg | : | : | : | : |
Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
Coordinates
chr3:+:9671517..9676005
Molecular Weight (calculated)
26924.4 Da
IEP (calculated)
9.029
GRAVY (calculated)
-1.402
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.