Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09244 | Canola | mitochondrion | 42.04 | 63.46 |
| AT3G46020.1 | Thale cress | mitochondrion | 40.76 | 62.75 |
| Bra020279.1-P | Field mustard | mitochondrion | 43.31 | 61.82 |
| Os01t0502800-01 | Rice | mitochondrion | 20.38 | 60.38 |
| KRH23034 | Soybean | mitochondrion | 29.94 | 54.65 |
| KRH10291 | Soybean | nucleus | 24.84 | 52.7 |
| VIT_06s0004g04260.t01 | Wine grape | mitochondrion | 33.12 | 49.06 |
| KXG36665 | Sorghum | mitochondrion | 27.39 | 40.95 |
| GSMUA_Achr6P34250_001 | Banana | mitochondrion | 28.66 | 40.91 |
| TraesCS4A01G100000.1 | Wheat | mitochondrion | 26.75 | 40.38 |
| TraesCS4B01G204300.1 | Wheat | mitochondrion | 26.11 | 38.68 |
| TraesCS4D01G205200.1 | Wheat | mitochondrion | 25.48 | 38.46 |
| AT4G13860.1 | Thale cress | cytosol | 16.56 | 29.89 |
| AT3G23830.1 | Thale cress | mitochondrion, plastid | 24.2 | 27.94 |
| AT5G06210.1 | Thale cress | mitochondrion | 24.84 | 26.71 |
| AT2G27330.1 | Thale cress | mitochondrion | 18.47 | 25.0 |
| AT4G13850.1 | Thale cress | mitochondrion | 24.84 | 24.68 |
| AT5G59865.1 | Thale cress | mitochondrion, plastid | 15.29 | 21.24 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 22.29 | 20.96 |
| AT1G73530.1 | Thale cress | plastid | 22.93 | 19.89 |
| AT3G08000.1 | Thale cress | plastid | 17.83 | 19.58 |
| AT5G54580.1 | Thale cress | mitochondrion, plastid | 19.11 | 19.23 |
| AT1G18630.1 | Thale cress | mitochondrion | 15.92 | 16.13 |
| AT4G39260.1 | Thale cress | nucleus | 15.92 | 14.79 |
| AT2G21660.1 | Thale cress | nucleus | 16.56 | 14.77 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 20.38 | 11.07 |
| AT3G26420.1 | Thale cress | nucleus | 16.56 | 10.61 |
| AT5G61030.1 | Thale cress | mitochondrion | 19.75 | 10.03 |
| AT3G20930.2 | Thale cress | plastid | 22.93 | 9.5 |
| AT1G60650.2 | Thale cress | nucleus | 14.65 | 7.88 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 14.01 | 7.1 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | EntrezGene:836108 | ProteinID:AED97243.1 | ArrayExpress:AT5G59860 | EnsemblPlantsGene:AT5G59860 |
| RefSeq:AT5G59860 | TAIR:AT5G59860 | RefSeq:AT5G59860-TAIR-G | EnsemblPlants:AT5G59860.1 | TAIR:AT5G59860.1 | UniProt:F4JXD2 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008150 |
| InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_200794.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR45502 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00001628CC |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXD2]
Coordinates
chr5:+:24113462..24114449
Molecular Weight (calculated)
17704.4 Da
IEP (calculated)
11.047
GRAVY (calculated)
-0.753
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MKADPRKETG IKLVAVEISL TFGNRKWQPH KNSGAKDEEA KFNKRTKYKM RIRPRSSISK RRRLIGGKTL TCVSNSGLSA YTTDQSLRQL FAPFARLIKD
101: QQTQRPKGFG FITFESEDDA QKALKALNGK IVNGRLIFVE TAKEVEAPTT SLKSNKD
101: QQTQRPKGFG FITFESEDDA QKALKALNGK IVNGRLIFVE TAKEVEAPTT SLKSNKD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.