Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41969 | Canola | cytosol | 66.86 | 88.28 |
| CDY42616 | Canola | cytosol | 79.88 | 85.99 |
| CDX90323 | Canola | plastid | 83.43 | 85.45 |
| Bra010693.1-P | Field mustard | nucleus | 83.43 | 85.45 |
| Bra011869.1-P | Field mustard | cytosol | 79.29 | 82.72 |
| CDY12133 | Canola | cytosol | 74.56 | 79.75 |
| AT2G21660.1 | Thale cress | nucleus | 79.88 | 76.7 |
| Solyc10g051390.1.1 | Tomato | nucleus | 52.66 | 75.42 |
| Solyc10g051380.1.1 | Tomato | nucleus | 54.44 | 70.77 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 55.03 | 69.92 |
| Zm00001d041246_P001 | Maize | nucleus | 59.76 | 69.66 |
| PGSC0003DMT400083014 | Potato | nucleus | 67.46 | 68.67 |
| PGSC0003DMT400084258 | Potato | nucleus | 67.46 | 68.67 |
| PGSC0003DMT400084290 | Potato | nucleus | 67.46 | 68.67 |
| Solyc01g109660.2.1 | Tomato | extracellular | 71.01 | 68.57 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 65.68 | 68.52 |
| Os12t0632000-01 | Rice | nucleus | 65.09 | 67.9 |
| Zm00001d031168_P001 | Maize | plastid | 62.13 | 67.74 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 66.86 | 67.66 |
| PGSC0003DMT400001879 | Potato | cytosol | 70.41 | 67.61 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 65.09 | 67.48 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 63.31 | 67.3 |
| TraesCS4A01G293000.1 | Wheat | plastid | 64.5 | 67.28 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 61.54 | 67.1 |
| KRH29451 | Soybean | nucleus | 67.46 | 66.67 |
| KXG37870 | Sorghum | nucleus | 66.86 | 66.47 |
| PGSC0003DMT400084266 | Potato | extracellular | 63.31 | 66.46 |
| KRH29452 | Soybean | nucleus | 60.95 | 66.03 |
| KRH51528 | Soybean | nucleus | 71.01 | 65.93 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 64.5 | 65.66 |
| EES16438 | Sorghum | nucleus | 63.91 | 65.45 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 65.68 | 65.29 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 65.68 | 65.29 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 60.95 | 65.19 |
| TraesCS5D01G020900.1 | Wheat | plastid | 66.86 | 64.94 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 60.95 | 63.58 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 60.35 | 62.96 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 60.35 | 62.96 |
| KRH29453 | Soybean | nucleus | 52.07 | 62.86 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 57.4 | 62.58 |
| KRH60842 | Soybean | mitochondrion | 66.86 | 61.08 |
| KRH29454 | Soybean | nucleus | 59.76 | 59.41 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 55.03 | 53.76 |
| Os03t0670700-01 | Rice | nucleus | 57.4 | 49.49 |
| AT4G13850.1 | Thale cress | mitochondrion | 44.38 | 47.47 |
| AT1G18630.1 | Thale cress | mitochondrion | 38.46 | 41.94 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 24.26 | 41.41 |
| AT3G23830.1 | Thale cress | mitochondrion, plastid | 33.14 | 41.18 |
| AT4G13860.1 | Thale cress | cytosol | 18.34 | 35.63 |
| AT3G46020.1 | Thale cress | mitochondrion | 18.34 | 30.39 |
| AT3G26420.1 | Thale cress | nucleus | 40.83 | 28.16 |
| AT5G59865.1 | Thale cress | mitochondrion, plastid | 18.34 | 27.43 |
| AT1G74230.1 | Thale cress | mitochondrion, plastid | 46.75 | 27.34 |
| AT5G61030.1 | Thale cress | mitochondrion | 47.93 | 26.21 |
| AT3G08000.1 | Thale cress | plastid | 21.3 | 25.17 |
| AT2G37510.2 | Thale cress | mitochondrion, plastid | 24.85 | 25.15 |
| AT5G06210.1 | Thale cress | mitochondrion | 20.71 | 23.97 |
| AT5G54580.1 | Thale cress | mitochondrion, plastid | 21.89 | 23.72 |
| AT2G27330.1 | Thale cress | mitochondrion | 15.98 | 23.28 |
| AT5G04280.1 | Thale cress | cytosol, nucleus, plastid | 40.83 | 22.26 |
| AT1G60650.2 | Thale cress | nucleus | 33.14 | 19.18 |
| AT1G73530.1 | Thale cress | plastid | 18.93 | 17.68 |
| AT5G59860.1 | Thale cress | nucleus | 14.79 | 15.92 |
| AT3G20930.2 | Thale cress | plastid | 18.34 | 8.18 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | EntrezGene:830082 | UniProt:A0A178UVJ6 | ProteinID:AEE87044.1 | EMBL:AK316798 |
| ArrayExpress:AT4G39260 | EnsemblPlantsGene:AT4G39260 | RefSeq:AT4G39260 | TAIR:AT4G39260 | RefSeq:AT4G39260-TAIR-G | EnsemblPlants:AT4G39260.1 |
| TAIR:AT4G39260.1 | EMBL:AY034997 | EMBL:AY063005 | UniProt:B9DFJ8 | ProteinID:CAB43641.1 | ProteinID:CAB80589.1 |
| Symbol:CCR1 | GO:GO:0000380 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009409 | GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009651 |
| GO:GO:0009719 | GO:GO:0009735 | GO:GO:0009737 | GO:GO:0009987 | GO:GO:0010043 | GO:GO:0016020 |
| GO:GO:0030312 | GO:GO:0045087 | GO:GO:0048046 | InterPro:IPR000504 | InterPro:IPR012677 | EMBL:L00649 |
| EMBL:L04171 | RefSeq:NP_195637.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAO97868.1 | PFAM:PF00076 | PO:PO:0000003 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44202 | UniProt:Q03251 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000012BB0B | EMBL:Z14988 | SEG:seg | : |
Description
RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
Coordinates
chr4:-:18273829..18275216
Molecular Weight (calculated)
16579.7 Da
IEP (calculated)
5.307
GRAVY (calculated)
-0.817
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GGGRGGSGGG
101: YRSGGGGGYS GGGGGGYSGG GGGGYERRSG GYGSGGGGGG RGYGGGGRRE GGGYGGGDGG SYGGGGGGW
101: YRSGGGGGYS GGGGGGYSGG GGGGYERRSG GYGSGGGGGG RGYGGGGRRE GGGYGGGDGG SYGGGGGGW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.