Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| cytosol:
22313117
extracellular: 22313117 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g109660.2.1 | Tomato | extracellular | 96.02 | 96.57 |
| Bra030284.1-P | Field mustard | nucleus | 73.86 | 77.38 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 71.02 | 77.16 |
| CDY15876 | Canola | nucleus | 73.86 | 76.92 |
| KRH29451 | Soybean | nucleus | 74.43 | 76.61 |
| CDY59763 | Canola | nucleus | 72.16 | 76.05 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 57.39 | 75.94 |
| CDY72366 | Canola | nucleus | 73.3 | 75.44 |
| AT2G21660.1 | Thale cress | nucleus | 75.0 | 75.0 |
| CDY70933 | Canola | nucleus | 71.59 | 75.0 |
| Bra031210.1-P | Field mustard | nucleus | 71.59 | 75.0 |
| KRH51528 | Soybean | nucleus | 76.7 | 74.18 |
| KRH29453 | Soybean | nucleus | 58.52 | 73.57 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 64.77 | 73.55 |
| KRH29452 | Soybean | nucleus | 64.77 | 73.08 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 70.45 | 72.94 |
| CDY41969 | Canola | cytosol | 52.84 | 72.66 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 64.77 | 72.15 |
| PGSC0003DMT400084266 | Potato | extracellular | 65.91 | 72.05 |
| CDY42616 | Canola | cytosol | 64.2 | 71.97 |
| CDX90323 | Canola | plastid | 67.05 | 71.52 |
| Bra010693.1-P | Field mustard | nucleus | 67.05 | 71.52 |
| PGSC0003DMT400084258 | Potato | nucleus | 67.05 | 71.08 |
| PGSC0003DMT400083014 | Potato | nucleus | 67.05 | 71.08 |
| PGSC0003DMT400084290 | Potato | nucleus | 67.05 | 71.08 |
| Zm00001d041246_P001 | Maize | nucleus | 58.52 | 71.03 |
| KRH29454 | Soybean | nucleus | 68.18 | 70.59 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 65.34 | 70.55 |
| AT4G39260.1 | Thale cress | nucleus | 67.61 | 70.41 |
| TraesCS4A01G293000.1 | Wheat | plastid | 64.77 | 70.37 |
| KRH60842 | Soybean | mitochondrion | 73.3 | 69.73 |
| Bra001972.1-P | Field mustard | nucleus | 64.77 | 69.51 |
| Zm00001d031168_P001 | Maize | plastid | 60.8 | 69.03 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 64.77 | 68.67 |
| Os12t0632000-01 | Rice | nucleus | 63.07 | 68.52 |
| Bra011869.1-P | Field mustard | cytosol | 63.07 | 68.52 |
| CDY46213 | Canola | nucleus | 47.16 | 68.03 |
| EES16438 | Sorghum | nucleus | 63.64 | 67.88 |
| CDY12133 | Canola | cytosol | 60.8 | 67.72 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 60.23 | 66.67 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 61.36 | 66.67 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 63.07 | 66.47 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 58.52 | 66.45 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 60.8 | 66.05 |
| CDX71276 | Canola | nucleus | 64.2 | 65.7 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 60.23 | 65.43 |
| KXG37870 | Sorghum | nucleus | 63.07 | 65.29 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 61.93 | 64.12 |
| TraesCS5D01G020900.1 | Wheat | plastid | 62.5 | 63.22 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 50.57 | 51.45 |
| Os03t0670700-01 | Rice | nucleus | 56.25 | 50.51 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 25.0 | 44.44 |
| PGSC0003DMT400040748 | Potato | mitochondrion | 32.39 | 39.31 |
| PGSC0003DMT400053017 | Potato | mitochondrion, plastid | 32.95 | 38.16 |
| PGSC0003DMT400076497 | Potato | nucleus | 39.77 | 34.15 |
| PGSC0003DMT400001786 | Potato | nucleus | 13.07 | 32.86 |
| PGSC0003DMT400045627 | Potato | nucleus | 39.2 | 32.24 |
| PGSC0003DMT400072235 | Potato | mitochondrion, nucleus | 46.59 | 31.18 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 22.16 | 30.23 |
| PGSC0003DMT400043581 | Potato | nucleus | 42.61 | 27.68 |
| PGSC0003DMT400064758 | Potato | mitochondrion | 38.64 | 27.09 |
| PGSC0003DMT400003685 | Potato | nucleus | 44.32 | 25.74 |
| PGSC0003DMT400028726 | Potato | nucleus | 21.02 | 25.34 |
| PGSC0003DMT400049607 | Potato | plastid | 21.02 | 23.57 |
| PGSC0003DMT400079815 | Potato | nucleus | 39.2 | 21.7 |
| PGSC0003DMT400070114 | Potato | endoplasmic reticulum, extracellular | 18.18 | 21.48 |
| PGSC0003DMT400022733 | Potato | plastid | 19.89 | 21.47 |
| PGSC0003DMT400056141 | Potato | mitochondrion | 17.05 | 20.27 |
| PGSC0003DMT400050134 | Potato | plastid | 19.32 | 8.5 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | ProteinID:ABB87126 | ProteinID:ABB87126.1 | ProteinID:CAA89058 | ProteinID:CAA89058.1 |
| EMBL:DQ241855 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | UniProt:M0ZJ84 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400000708 | PGSC:PGSC0003DMG400000708 |
| EnsemblPlants:PGSC0003DMT400001879 | PFscan:PS50102 | PANTHER:PTHR45429 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002967913 | EMBL:Z49197 | SEG:seg | : | : |
Description
Glycine-rich RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000708]
Coordinates
chr1:+:85987215..85988480
Molecular Weight (calculated)
17294.3 Da
IEP (calculated)
4.992
GRAVY (calculated)
-0.902
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVEYRCFV GGLAWATTDQ TLSDAFSQYG EVVESKIIND RETGRSRGFG FVTFKDEQAM RDAIEGMNGQ DLDGRNITVN EAQSRGGGGG GGGGGGYGGG
101: RREGGGGGYG GGGGYGGGRR EGGGGGGYSG GGGGYGGGRR EGGYGGGGGG YGGGDRYSDR SSRGGGGGSS DGNWRS
101: RREGGGGGYG GGGGYGGGRR EGGGGGGYSG GGGGYGGGRR EGGYGGGGGG YGGGDRYSDR SSRGGGGGSS DGNWRS
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.