Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
22729884
|
extracellular:
19786127
golgi: 23128297 nucleus: 26228564 |
gfp PMID:
22729884
doi
Division of Biotechnology, Korea University, Anam-Dong, Seongbuk-Gu, Seoul 136-701, Republic of Korea.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G015000.1 | Wheat | nucleus | 95.21 | 93.53 |
| TraesCS5D01G020900.1 | Wheat | plastid | 95.81 | 91.95 |
| Solyc10g051390.1.1 | Tomato | nucleus | 52.69 | 74.58 |
| EES16438 | Sorghum | nucleus | 73.05 | 73.94 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 71.86 | 73.62 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 70.06 | 73.58 |
| Zm00001d031168_P001 | Maize | plastid | 67.07 | 72.26 |
| KXG37870 | Sorghum | nucleus | 73.05 | 71.76 |
| Zm00001d041246_P001 | Maize | nucleus | 62.28 | 71.72 |
| CDX90323 | Canola | plastid | 70.06 | 70.91 |
| Bra010693.1-P | Field mustard | nucleus | 70.06 | 70.91 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 56.29 | 70.68 |
| PGSC0003DMT400084266 | Potato | extracellular | 67.66 | 70.19 |
| Solyc10g051380.1.1 | Tomato | nucleus | 54.49 | 70.0 |
| CDY41969 | Canola | cytosol | 53.29 | 69.53 |
| CDY42616 | Canola | cytosol | 65.27 | 69.43 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 71.86 | 69.36 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 70.06 | 68.82 |
| KRH29451 | Soybean | nucleus | 70.06 | 68.42 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 65.87 | 67.9 |
| CDY12133 | Canola | cytosol | 64.07 | 67.72 |
| Bra001972.1-P | Field mustard | nucleus | 66.47 | 67.68 |
| Bra030284.1-P | Field mustard | nucleus | 67.66 | 67.26 |
| CDY46213 | Canola | nucleus | 49.1 | 67.21 |
| AT4G39260.1 | Thale cress | nucleus | 67.66 | 66.86 |
| CDY15876 | Canola | nucleus | 67.66 | 66.86 |
| CDY72366 | Canola | nucleus | 68.26 | 66.67 |
| CDY59763 | Canola | nucleus | 66.47 | 66.47 |
| KRH29453 | Soybean | nucleus | 55.69 | 66.43 |
| CDY70933 | Canola | nucleus | 66.47 | 66.07 |
| Bra031210.1-P | Field mustard | nucleus | 66.47 | 66.07 |
| Bra011869.1-P | Field mustard | cytosol | 64.07 | 66.05 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 64.07 | 66.05 |
| KRH29452 | Soybean | nucleus | 61.68 | 66.03 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 61.08 | 65.81 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 61.68 | 65.19 |
| CDX71276 | Canola | nucleus | 67.07 | 65.12 |
| PGSC0003DMT400083014 | Potato | nucleus | 64.07 | 64.46 |
| PGSC0003DMT400084258 | Potato | nucleus | 64.07 | 64.46 |
| PGSC0003DMT400084290 | Potato | nucleus | 64.07 | 64.46 |
| AT2G21660.1 | Thale cress | nucleus | 67.07 | 63.64 |
| Solyc01g109660.2.1 | Tomato | extracellular | 66.47 | 63.43 |
| PGSC0003DMT400001879 | Potato | cytosol | 66.47 | 63.07 |
| KRH51528 | Soybean | nucleus | 67.66 | 62.09 |
| KRH29454 | Soybean | nucleus | 62.87 | 61.76 |
| KRH60842 | Soybean | mitochondrion | 64.07 | 57.84 |
| TraesCS3B01G457900.1 | Wheat | plastid | 44.91 | 42.86 |
| TraesCS5B01G516400.1 | Wheat | nucleus | 41.92 | 31.96 |
| TraesCS7B01G227500.2 | Wheat | nucleus | 43.11 | 31.3 |
| TraesCS3B01G465800.1 | Wheat | mitochondrion | 42.52 | 30.74 |
| TraesCS3B01G610900.1 | Wheat | mitochondrion | 19.76 | 30.28 |
| TraesCS2B01G312500.1 | Wheat | mitochondrion | 23.95 | 28.78 |
| TraesCS4B01G204300.1 | Wheat | mitochondrion | 17.37 | 27.36 |
| TraesCS5B01G470700.1 | Wheat | mitochondrion | 49.7 | 27.04 |
| TraesCS2B01G237100.1 | Wheat | mitochondrion | 21.56 | 25.9 |
| TraesCS2B01G203200.1 | Wheat | mitochondrion | 47.31 | 24.76 |
| TraesCS7B01G207500.1 | Wheat | mitochondrion | 22.16 | 24.34 |
| TraesCS4B01G204600.1 | Wheat | plastid | 23.95 | 23.39 |
| TraesCS2B01G259400.1 | Wheat | nucleus | 40.12 | 22.87 |
| TraesCS4B01G026400.1 | Wheat | nucleus | 41.92 | 21.94 |
| TraesCS3B01G454200.1 | Wheat | mitochondrion | 19.16 | 21.92 |
| TraesCS6B01G322400.1 | Wheat | plastid | 19.76 | 8.51 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G013200.1 | EnsemblPlantsGene:TraesCS5B01G013200 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44202 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:cd12399 |
| MapMan:16.7.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:13178835..13179475
Molecular Weight (calculated)
16256.3 Da
IEP (calculated)
4.890
GRAVY (calculated)
-0.858
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETEYRCFV GGLAWATDDN NLQQAFSQYG EILDAKIIND RETGRSRGFG FVTFGSEESM RQAIEEMNGK ELDGRNITVN EAQSRRSGGG GGGGGGYGGQ
101: RGGGGGYGGG GGYGGGGGGY GGQGGGGYGG QRGGGGGYGG GGGYGGGGGY GGQRGGGGGD SGGQWRN
101: RGGGGGYGGG GGYGGGGGGY GGQGGGGYGG QRGGGGGYGG GGGYGGGGGY GGQRGGGGGD SGGQWRN
1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW
Arabidopsis Description
RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.