Factsheet for TraesCS3A01G329100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G150600.1
TraesCS1B01G168200.1
TraesCS1D01G147600.1
TraesCS2A01G440000.2
TraesCS2B01G461400.1
TraesCS2B01G461500.1
TraesCS2D01G118700.1
TraesCS2D01G438800.1
TraesCS2D01G438900.1
TraesCS4A01G137900.1
TraesCS4A01G293000.1
TraesCS4B01G020300.1
TraesCS4B01G148100.1
TraesCS4D01G018500.1
TraesCS4D01G153300.1
TraesCS5A01G015000.1
TraesCS5A01G197800.2
TraesCS5A01G272600.1
TraesCS5B01G013200.1
TraesCS5B01G185900.1
TraesCS5B01G272800.1
TraesCS5D01G020900.1
TraesCS5D01G193100.1
TraesCS5D01G280600.1
TraesCS6A01G085400.1
TraesCS6A01G216500.1
TraesCS6A01G268900.1
TraesCS6B01G246400.1
TraesCS6B01G296200.1
TraesCS6D01G199100.1
TraesCS6D01G246000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16950.1	TraesCS4A01G293000.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS4B01G020300.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS4D01G018500.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS5A01G015000.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS5B01G013200.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS5D01G020900.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS6A01G216500.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS6B01G246400.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS6D01G199100.1	AT2G21660.1	14756317
AT2G16950.1	TraesCS1A01G150600.1	AT4G14300.1	14756317
AT2G16950.1	TraesCS1B01G168200.1	AT4G14300.1	14756317
AT2G16950.1	TraesCS1D01G147600.1	AT4G14300.1	14756317
AT2G16950.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT2G16950.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT2G16950.1	TraesCS4D01G153300.1	AT4G26630.1	25387881
AT2G16950.1	TraesCS2A01G440000.2	AT5G27080.1	20706207
AT2G16950.1	TraesCS2B01G461400.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS2B01G461500.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS2D01G118700.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS2D01G438800.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS2D01G438900.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS5A01G197800.2	AT5G27080.1	20706207
AT2G16950.1	TraesCS5A01G272600.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS5B01G185900.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS5B01G272800.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS5D01G193100.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS5D01G280600.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS6A01G085400.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS6A01G268900.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS6B01G296200.1	AT5G27080.1	20706207
AT2G16950.1	TraesCS6D01G246000.1	AT5G27080.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G16953.1	Thale cress	cytosol	3.06	46.88
TraesCS2A01G562500.1	Wheat	golgi	38.84	42.47
KRG90653	Soybean	cytosol	35.47	38.84
KRH36099	Soybean	cytosol	35.17	38.63
VIT_03s0038g02830.t01	Wine grape	cytosol	35.27	38.62
GSMUA_Achr8P34170_001	Banana	cytosol	34.76	38.27
Solyc01g111780.2.1	Tomato	nucleus, plastid	34.35	37.87
VIT_18s0001g00910.t01	Wine grape	cytosol	33.33	36.87
GSMUA_Achr4P16350_001	Banana	cytosol	11.52	36.45
AT2G16950.1	Thale cress	cytosol	32.82	35.98
CDY02225	Canola	cytosol	32.21	35.83
Bra013038.1-P	Field mustard	cytosol	32.11	35.75
CDY47482	Canola	cytosol	32.11	35.67
Bra002011.1-P	Field mustard	cytosol	31.8	35.41
Bra037286.1-P	Field mustard	cytosol	32.11	35.2
CDY31391	Canola	cytosol	31.6	35.15
CDX89768	Canola	cytosol	30.78	34.51
CDY71774	Canola	cytosol	9.58	33.22
CDY26790	Canola	cytosol	3.98	33.05
TraesCS2B01G426000.1	Wheat	cytosol	10.81	29.12
Bra010184.1-P	Field mustard	cytosol, mitochondrion	8.66	27.87
AT2G16960.1	Thale cress	cytosol	14.98	26.63
CDY54431	Canola	cytosol	32.01	26.28
TraesCS5A01G077200.1	Wheat	golgi	12.23	13.76
TraesCS5A01G082600.1	Wheat	golgi	12.03	13.53
TraesCS1A01G222800.2	Wheat	golgi, unclear	11.21	12.67
TraesCS1A01G065600.1	Wheat	cytosol	11.11	12.54
TraesCS4A01G111400.1	Wheat	endoplasmic reticulum	10.91	12.13
TraesCS2A01G435400.1	Wheat	cytosol	9.68	11.9
CDY26791	Canola	cytosol	1.33	10.16
TraesCS1A01G065000.1	Wheat	cytosol	3.26	9.44
TraesCS3A01G325000.1	Wheat	cytosol	4.18	7.88

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.2	Gene3D:3.40.420.10	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008152	GO:GO:0008536	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0017148	GO:GO:0019538	GO:GO:0030598	InterPro:IPR001494	InterPro:IPR011989	InterPro:IPR016138
InterPro:Importin-beta_N	PFAM:PF00161	PFAM:PF03810	PANTHER:PTHR10527	PANTHER:PTHR10527:SF3	InterPro:Ribosome-inact_prot_sf
InterPro:Ribosome_inactivat_prot	InterPro:Ribosome_inactivat_prot_sub1	SUPFAM:SSF48371	SUPFAM:SSF56371	EnsemblPlantsGene:TraesCS3A01G329100	EnsemblPlants:TraesCS3A01G329100.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:574327754..574342523

Molecular Weight (calculated)

110720.0 Da

IEP (calculated)

6.378

GRAVY (calculated)

-0.055

Length

981 amino acids

Sequence
(BLAST)

001: MRGPIRLRAS PRLGREAPPP RPQPLRARWF PLLPPLGAEN LPHPQDVPTF SIQVDITEES FDHLMALLSK RMRDVCSLML GEHPVTPPLV DGKDLFHIVK
101: LCKGADGVEV LFRESDIYFS GFRPEKDPKY YVFNDVEIPS WIPSEILPYD SGYHKTVADI SLGPHCFPAT FKHLFNFTPK TFRTQTADRQ NAVHWSMVNL
201: SETRRIRSME RKVKRLLRIG RVDTVGASLD AKVHGWGHES SVLFAAASDD VNWEHIGCGE DLITLKFNRD ALPIIIGRLK RAAEAAAATL NEITILIKTL
301: SSIDSNQARN WEQLHYYSQL PNFHGISFEL RQAAGLLLKN NLQLAFNAMP PSSQKYVKYE LLTCIGTRHK QIRSTACTVI SVLLQIVGFD KWADLFETLR
401: LCFDSQDLNQ KEGAAETIYK ICENFPEDSI VDAGLRDLLI YDFVPRLMQL FESPHMSLRR LSLLCVNQCI FVVPSVCSSW TLLMERQLIP ELYLETAINF
501: VLLASNELDE DLALEACKFW YAFCQHVLTT CKLFRSYCDS SKGLQEVLPE LIPTLVQKMV YTDHDDSLAD IKEYESISIR DQDLKRHFHA SRLHRFETGK
601: ENDKLAQTDD DGWKDREVAV LCLNTIAEGC MTGLYSHTPE IFHMLILLLD DKFPLVRRIT CQTISRYSKF IVQSCDHEQF AKIIVGLLRR ILDTNKKVQE
701: AARSAFMTIG KDAAESNGME IILEQLILEL GKHQMRDLWL ISEALCSLAN VVGAKLNKVQ HADELLAEHL HIVVPPLIEK WQQLQKSNKD ILPLLECFTS
801: IAQAAGSGFF QFAEPVFQNS LDLIKFQQLA NADPAAPHDK DFIVYSLDLL LVLAEALGAD TESLVCHTHV LPRLEEFLEV AAEQLIMQSV KAAPSVANNA
901: CWIIGELAMK FGQETSSPVV TTILSRLLPI LRSSEGLDNI VVGNTAITLG RLSLVWPMTV SAHLKRSGTY STGQNMQSVS K

Best Arabidopsis Sequence Match ( AT2G16950.2 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.