Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P34170_001 | Banana | cytosol | 87.1 | 30.3 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 73.55 | 29.69 |
| Zm00001d026696_P005 | Maize | cytosol | 73.55 | 25.62 |
| EES11709 | Sorghum | cytosol | 72.9 | 25.42 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 73.55 | 25.42 |
| Zm00001d002936_P010 | Maize | cytosol | 72.9 | 25.36 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 73.23 | 25.31 |
| TraesCS2A01G562500.1 | Wheat | golgi | 73.23 | 25.31 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 71.29 | 25.0 |
| TraesCS2B01G426000.1 | Wheat | cytosol | 15.81 | 13.46 |
| TraesCS3A01G329100.1 | Wheat | cytosol, mitochondrion | 36.45 | 11.52 |
| GSMUA_Achr5P09570_001 | Banana | cytosol | 6.13 | 7.85 |
| GSMUA_Achr5P28110_001 | Banana | cytosol | 20.32 | 7.49 |
| GSMUA_Achr10P... | Banana | cytosol | 18.71 | 6.9 |
| GSMUA_Achr1P28070_001 | Banana | cytosol | 18.06 | 6.67 |
| GSMUA_Achr8P01910_001 | Banana | cytosol | 16.45 | 6.35 |
| GSMUA_Achr3P25220_001 | Banana | cytosol | 14.84 | 5.74 |
| GSMUA_Achr4P16360_001 | Banana | cytosol | 5.81 | 3.42 |
| GSMUA_Achr5P09580_001 | Banana | cytosol | 0.0 | 0.0 |
| Os04t0691600-02 | Rice | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008536 | EnsemblPlantsGene:GSMUA_Achr4G16350_001 | EnsemblPlants:GSMUA_Achr4P16350_001 | EnsemblPlants:GSMUA_Achr4T16350_001 |
| InterPro:HEAT | InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N | UniProt:M0SPE9 | PFAM:PF02985 |
| PFAM:PF03810 | PFscan:PS50166 | PANTHER:PTHR10527 | PANTHER:PTHR10527:SF3 | SMART:SM00913 | SUPFAM:SSF48371 |
| UniParc:UPI0002957AAB | SEG:seg | : | : | : | : |
Description
Putative Transportin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G16350_001]
Coordinates
chr4:+:14596111..14604413
Molecular Weight (calculated)
35149.6 Da
IEP (calculated)
4.673
GRAVY (calculated)
0.079
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAALWQPR EEGLREICGL LEQQISPNGD QARIWQQLQQ YNRLADFNNY LVFILAHAVG KSLEVRQAAG LLLKNNLRTT FSSLSSSYRQ YIKSELLPCL
101: GASDRTVRST VGTVVSVLLQ LETVAGWPEL LEALAQCLAS NDFNHMEGAM DAIYKICEDI PEELDVDVPG LSERPINIFV PRLLQFFQSP HAILRKLSLS
201: SINQFIVFMP TALFMSMDQY LQGLFHLAQD PSAEVRKLVC SAFVQLIEVR PTFLEPHLRN VIEYLLQANK DPDDEVALEA CEFWYVHVSV ALTDEIRALE
301: IMYRDIKMTL
101: GASDRTVRST VGTVVSVLLQ LETVAGWPEL LEALAQCLAS NDFNHMEGAM DAIYKICEDI PEELDVDVPG LSERPINIFV PRLLQFFQSP HAILRKLSLS
201: SINQFIVFMP TALFMSMDQY LQGLFHLAQD PSAEVRKLVC SAFVQLIEVR PTFLEPHLRN VIEYLLQANK DPDDEVALEA CEFWYVHVSV ALTDEIRALE
301: IMYRDIKMTL
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.