Factsheet for Os04t0691500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0700100-01
Os03t0596900-01
Os03t0670700-01
Os04t0599800-01
Os09t0242300-00
Os12t0632000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16950.1	Os03t0670700-01	AT2G21660.1	14756317
AT2G16950.1	Os12t0632000-01	AT2G21660.1	14756317
AT2G16950.1	Os03t0596900-01	AT4G26630.1	25387881
AT2G16950.1	Os02t0700100-01	AT5G27080.1	20706207
AT2G16950.1	Os04t0599800-01	AT5G27080.1	20706207
AT2G16950.1	Os09t0242300-00	AT5G27080.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11709	Sorghum	cytosol	89.32	77.17
HORVU2Hr1G126610.7	Barley	cytosol	88.28	76.7
Zm00001d002936_P010	Maize	cytosol	88.93	76.66
TraesCS2A01G562500.1	Wheat	golgi	89.19	76.37
TraesCS2D01G572700.1	Wheat	cytosol	89.06	76.25
TraesCS2B01G624100.1	Wheat	cytosol	89.06	76.25
Zm00001d026696_P005	Maize	cytosol	87.24	75.28
GSMUA_Achr4P16350_001	Banana	cytosol	29.69	73.55
GSMUA_Achr8P34170_001	Banana	cytosol	78.26	67.45
CDY26790	Canola	cytosol	10.29	66.95
CDY71774	Canola	cytosol	23.83	64.66
VIT_03s0038g02830.t01	Wine grape	cytosol	74.61	63.95
KRG90653	Soybean	cytosol	74.09	63.5
KRH36099	Soybean	cytosol	73.05	62.82
Solyc01g111780.2.1	Tomato	nucleus, plastid	72.27	62.36
VIT_18s0001g00910.t01	Wine grape	cytosol	70.96	61.44
AT2G16950.1	Thale cress	cytosol	70.44	60.45
CDY47482	Canola	cytosol	69.14	60.14
Bra037286.1-P	Field mustard	cytosol	69.79	59.89
CDY02225	Canola	cytosol	68.75	59.86
Bra013038.1-P	Field mustard	cytosol	68.49	59.7
CDY31391	Canola	cytosol	68.49	59.64
Bra002011.1-P	Field mustard	cytosol	68.36	59.59
CDX89768	Canola	cytosol	66.41	58.29
Bra010184.1-P	Field mustard	cytosol, mitochondrion	18.23	45.9
CDY54431	Canola	cytosol	69.53	44.69
AT2G16960.1	Thale cress	cytosol	28.52	39.67
AT2G16953.1	Thale cress	cytosol	1.82	21.88
Os05t0353400-01	Rice	cytosol, plasma membrane, plastid	20.05	17.74
Os12t0568800-01	Rice	plasma membrane	14.97	16.36
Os03t0294600-01	Rice	cytosol	5.21	10.78
CDY26791	Canola	cytosol	1.17	7.03
Os04t0691600-02	Rice	plastid	0.13	0.69

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.2	UniProt:A0A0N7KJZ4	InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:BAS91785.1
GO:GO:0000060	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005654	GO:GO:0005737
GO:GO:0006607	GO:GO:0006610	GO:GO:0006810	GO:GO:0006886	GO:GO:0008139	GO:GO:0008150
GO:GO:0008536	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0031965	GO:GO:0034399
InterPro:HEAT	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N	EnsemblPlantsGene:Os04g0691500	EnsemblPlants:Os04t0691500-01
PFAM:PF02985	PFAM:PF03810	PFAM:PF13513	PFscan:PS50166	PANTHER:PTHR10527	PANTHER:PTHR10527:SF3
SMART:SM00913	SUPFAM:SSF48371	UniParc:UPI000224D256	SEG:seg	:	:

Description

Similar to predicted protein. (Os04t0691500-01);Similar to TRN1 (TRANSPORTIN 1); protein transporter. (Os04t0691500-02)

Coordinates

chr4:+:35369085..35381224

Molecular Weight (calculated)

85812.2 Da

IEP (calculated)

4.578

GRAVY (calculated)

0.025

Length

768 amino acids

Sequence
(BLAST)

001: MAAAAALWQP QEEGLREICT LLDAHISPNS DQARIWQQLQ HYSQFPDFNN YLVFLLARGE GKSFEARQAA GLLLKNNLRA TFSSMPPASQ QYVKSELLPC
101: IGATNKAIRS TVGTVISVLF QIVRVAGWIE LFQALHQCLD SNDLDHMEGA MDAIYKICED VPEELDVDVP GLPERPINVF MPRLLQFFQS THAILRKLAL
201: GCINQYIVVM PAALYMSMDQ YLQGLFNLAK DPSADVRKLV CSAWVQLIEV RPSILEPHLK NVTELMLQAN KDSDDEVALE ACEFWSAYCD VSMPPEGLRE
301: FLPRLIPTLL SNMSYSDDDE SLADAEEDES FPDRDQDLKP RFHASRLHGS ETGEDDDDDD AVNVWNLRKC SAAGLDVLSN VFGDDILPTL MPLIQQNLAR
401: TDDDAWKERE AAVLSIGAIA EGCITGLYPH LPQIVAFLIP LLDDKFPLIR SITCWTLSRY SKFIVQSLEH PNGREQFDKI LLGLLRRVLD TNKRVQEAAC
501: SAFATLEEEA AEELVPHLGI ILQHLMCAYG KYQRRNLRIL YDALGTLADA VGAELNQAKY LDIFMPPLIT KWQQLANSDK DLFPLLECFT SIAQALGPGF
601: SQFAEPVFQR CINLIQSQHL AKVDPAAAGA LYDKEFIVCA LDLLSGLAEG LGAGIESLVS QSSLRDILLQ CCMDEAADVR QSALALLGDL SRVCPIHLHP
701: RLQEFLNVAA KQLNPQCVKE AVSVANNACW AIGELAIKVL YHFCNPSFFY FKRYCNPRLI HIDVSFLF

Best Arabidopsis Sequence Match ( AT2G16950.2 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.