Factsheet for Os09t0242300-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0247200-01
Os02t0656300-01
Os02t0785900-00
Os03t0236966-00
Os04t0484800-01
Os04t0551800-01
Os05t0149900-01
Os06t0538000-01
Os06t0622500-00
Os06t0679100-00
Os06t0687700-01
Os12t0626300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	Os12t0626300-01	AT1G06590.1	20706207
AT4G33270.1	Os03t0236966-00	AT1G78770.1	20706207
AT4G33270.1	Os04t0484800-01	AT2G04660.1	20706207
AT4G33270.1	Os06t0622500-00	AT2G20000.1	17944809
AT4G33270.1	Os06t0622500-00	AT2G20000.1	20706207
AT4G33270.1	Os05t0149900-01	AT2G39090.1	20706207
AT4G33270.1	Os06t0687700-01	AT3G11830.1	20706207
AT4G33270.1	Os02t0656300-01	AT3G48150.1	20706207
AT4G33270.1	Os06t0679100-00	AT3G48150.1	20706207
AT4G33270.1	Os02t0785900-00	AT4G21530.1	20706207
AT4G33270.1	Os02t0247200-01	AT5G26360.1	20706207
AT4G33270.1	Os06t0538000-01	AT5G26360.1	20706207
AT5G26900.1	Os06t0622500-00	AT2G20000.1	17944809
AT5G27080.1	Os06t0687700-01	AT3G11830.1	20706207
AT5G27080.1	Os04t0551800-01	AT3G20050.1	20706207
AT5G27080.1	Os02t0247200-01	AT5G26360.1	20706207
AT5G27080.1	Os06t0538000-01	AT5G26360.1	20706207
AT5G27570.1	Os06t0622500-00	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	78.87	79.2
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	78.87	79.2
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	78.24	78.57
Os02t0700100-01	Rice	extracellular	70.08	71.43
GSMUA_Achr11P...	Banana	plastid	67.57	68.14
GSMUA_Achr5P18020_001	Banana	nucleus, plastid	66.95	67.65
HORVU5Hr1G041780.3	Barley	plastid	74.9	66.17
GSMUA_Achr8P14580_001	Banana	nucleus, plastid	65.48	65.07
Os04t0599800-01	Rice	nucleus	67.99	64.48
VIT_05s0102g00550.t01	Wine grape	nucleus	54.6	63.2
VIT_15s0107g00320.t01	Wine grape	nucleus	59.41	63.11
PGSC0003DMT400001467	Potato	nucleus	59.62	62.91
VIT_05s0102g00640.t01	Wine grape	nucleus	54.18	62.71
Solyc03g096870.2.1	Tomato	nucleus	59.41	62.69
VIT_05s0029g01120.t01	Wine grape	nucleus	53.97	62.47
Solyc06g072830.2.1	Tomato	nucleus, plastid	59.41	62.42
PGSC0003DMT400069533	Potato	nucleus, plastid	59.41	62.42
VIT_05s0102g00680.t01	Wine grape	nucleus	54.18	62.41
AT4G33260.1	Thale cress	nucleus	58.16	62.19
Bra037011.1-P	Field mustard	nucleus	53.56	61.1
AT4G33270.1	Thale cress	nucleus	58.37	61.05
VIT_16s0039g02510.t01	Wine grape	nucleus	57.11	60.53
Bra005544.1-P	Field mustard	nucleus	55.44	60.36
Solyc08g005420.2.1	Tomato	nucleus	55.86	59.6
PGSC0003DMT400047585	Potato	nucleus	55.44	59.15
AT5G27570.1	Thale cress	nucleus	54.81	58.22
Bra034555.1-P	Field mustard	nucleus	45.61	57.52
AT5G27080.1	Thale cress	nucleus	52.93	57.24
AT5G26900.1	Thale cress	nucleus	52.93	56.98
Bra008327.1-P	Field mustard	cytosol, mitochondrion	48.33	53.97
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	43.31	48.36
VIT_16s0039g02620.t01	Wine grape	cytosol	21.76	44.83
CDX98239	Canola	nucleus	12.34	44.03
KRH08491	Soybean	cytosol	12.34	42.14
Bra011430.1-P	Field mustard	cytosol	58.58	39.16
Os01t0972900-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	37.87	37.87
Os03t0123300-01	Rice	plastid	36.4	33.27
Os01t0973000-01	Rice	cytosol	0.84	1.42

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	EntrezGene:4346480	InterPro:Apc4_WD40_dom	UniProt:B9G290	ProteinID:BAT06996.1
InterPro:Cdc20/Fizzy	ProteinID:EEE69236.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234
GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os09g0242300
EnsemblPlants:Os09t0242300-00	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19918	PANTHER:PTHR19918:SF12	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0001934E66	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015611482.1	SEG:seg

Description

OsWD40-167Similar to cell division cycle protein 20. (Os09t0242300-00)

Coordinates

chr9:+:3168391..3171203

Molecular Weight (calculated)

53070.2 Da

IEP (calculated)

7.163

GRAVY (calculated)

-0.335

Length

478 amino acids

Sequence
(BLAST)

001: MEAPGSGSVP TAKRRRLVPR PPPVPLEVAG ARGPYMPPLC IKSKNPSAKC YGDRFIPDRS AMDMDMAYFL LTEPKKEKEN TDMLSPAEEA YKRLLAEKLL
101: NNRSRILAFR NKPPEPEGIV QQLLYETLTS SQTKPARKCR HIPQSSERTL DAPGIVDDFY LNILDWGCKN VMSIALGNTL YLWNSADGSI MDLVTIDEDD
201: GPITSVSWSC DGQWIAVGLN SSDIQLWDTS SNRMLRTLHG VHQSRVGSLA WNKNILTTGG MDGNIVNNDV RMRSHVVHIY RGHEDEVCGL RWSGSGQQLA
301: SGGNDNLVHI WDVSMASSNL SLGHNRWLHR FGDHLAAVKA LAWCPFQSNL LASGGGGDDR CIRFWNTHTG LCLNSVDTGS QVCGLLWNKN EKELLSAHGY
401: VQNSLALWKY PSMVKLAELE DHTARVLCLA QSPDGFTVAS VAADETLRLW KIFETSEDAK PVFKTVNTGM FNSFSHIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.