Factsheet for VIT_16s0039g02510.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0102g00640.t01	Wine grape	nucleus	74.94	81.84
VIT_05s0102g00550.t01	Wine grape	nucleus	74.94	81.84
VIT_05s0029g01120.t01	Wine grape	nucleus	74.72	81.6
VIT_05s0102g00680.t01	Wine grape	nucleus	74.28	80.72
VIT_15s0107g00320.t01	Wine grape	nucleus	79.6	79.78
OQU82251	Sorghum	cytosol	27.94	72.0
TraesCS5A01G272600.1	Wheat	plastid	69.18	66.81
TraesCS5D01G280600.1	Wheat	plastid	69.18	66.67
Os02t0700100-01	Rice	extracellular	69.18	66.52
TraesCS5B01G272800.1	Wheat	plastid	68.96	66.45
TraesCS6B01G296200.1	Wheat	plastid	69.62	66.24
TraesCS6A01G268900.1	Wheat	plastid	69.62	66.24
KXG30937	Sorghum	nucleus	69.18	66.24
TraesCS6D01G246000.1	Wheat	plastid	69.62	66.11
VIT_16s0039g02620.t01	Wine grape	cytosol	33.7	65.52
EES06634	Sorghum	nucleus	68.51	65.05
Zm00001d000168_P001	Maize	plastid	68.29	64.57
Zm00001d016034_P002	Maize	nucleus	67.18	64.33
TraesCS2D01G438800.1	Wheat	nucleus	66.52	61.6
TraesCS2B01G461400.1	Wheat	nucleus	66.74	61.55
Os04t0599800-01	Rice	nucleus	68.29	61.11
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	63.41	60.08
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	63.41	60.08
TraesCS2A01G440000.2	Wheat	nucleus	65.19	60.0
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	63.19	59.87
TraesCS6A01G085400.1	Wheat	nucleus	49.22	58.12
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	60.53	57.47
Os09t0242300-00	Rice	plastid	60.53	57.11
KXG27036	Sorghum	cytosol	22.17	55.25
HORVU5Hr1G041780.3	Barley	plastid	62.97	52.5
HORVU6Hr1G068080.3	Barley	plastid	58.98	49.91
Zm00001d017725_P001	Maize	mitochondrion	31.93	46.01
VIT_16s0013g00280.t01	Wine grape	nucleus	44.57	44.18
VIT_13s0019g01840.t01	Wine grape	plastid	42.13	40.34
Zm00001d005562_P001	Maize	plastid	18.4	40.1
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	38.58	38.5
TraesCS2D01G118700.1	Wheat	cytosol	13.97	30.0
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	8.87	27.4
Zm00001d006622_P001	Maize	golgi	13.53	18.05
TraesCS2D01G438900.1	Wheat	mitochondrion	1.11	1.23
TraesCS2B01G461500.1	Wheat	mitochondrion	1.11	1.22

Protein Annotations

EntrezGene:100240849	wikigene:100240849	MapMan:13.3.4.1.4	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	ProteinID:CBI26565
ProteinID:CBI26565.3	InterPro:Cdc20/Fizzy	UniProt:D7T7U4	EMBL:FN595750	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EntrezGene:LOC100240849	wikigene:LOC100240849	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00015C91CE	ArrayExpress:VIT_16s0039g02510	EnsemblPlantsGene:VIT_16s0039g02510	EnsemblPlants:VIT_16s0039g02510.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002275163	RefSeq:XP_002275163.2	RefSeq:XP_010662147.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:+:2742535..2745507

Molecular Weight (calculated)

50421.5 Da

IEP (calculated)

8.721

GRAVY (calculated)

-0.482

Length

451 amino acids

Sequence
(BLAST)

001: MDAGSLSSLN CNSTYKCPLQ EQFHRRRKTR ENLDRFIPNR SAMDFDYAHY MLTKGRKGKE NPSVLSPSIE AYLKLLANTF HMNRGRILAF KNKPPTPVEL
101: TPREFLSPVR QFKPSKPKQH IPQTPERTLD APDIIDDYYL NLLDWGSSNI LAIGLGSTVH FWDGSNGSTS ELVTVDDENG PVTSISWAAD GQHIAIGLNN
201: SDVQLWDSTA NQLLRTLRGG HQSRVGSLAW NNHILTTGGR DGKIINNDVR VRSHIVETYR GHHQEVCGLK WSASGQQLAS GGNDNMLYIW DRSMSSSNSR
301: SQWLHRLEDH TAAVKALAWC PFQSNLLASG GGGNDLCIRF WNTHTGACLN TVDTGSQVCA LLWNKKEREL LSSHGFSQNQ LTLWKYPSMV KITELTGHTS
401: RVLFMAQSPD GCTVVTAAGD ETLKFWNVFG TTPEVKNAAP KELFPHFSRI R

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.