CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92655
EER95202
EES02737
EES04545
EES05908
EES05938
EES07517
KXG20781
KXG21309
KXG33895

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	EES02737	AT1G06590.1	20706207
AT4G33270.1	EER95202	AT1G78770.1	20706207
AT4G33270.1	KXG20781	AT2G04660.1	20706207
AT4G33270.1	KXG33895	AT2G20000.1	17944809
AT4G33270.1	KXG33895	AT2G20000.1	20706207
AT4G33270.1	KXG21309	AT2G39090.1	20706207
AT4G33270.1	EES04545	AT3G11830.1	20706207
AT4G33270.1	EES07517	AT3G48150.1	20706207
AT4G33270.1	EES05908	AT4G21530.1	20706207
AT4G33270.1	EER92655	AT5G26360.1	20706207
AT5G26900.1	KXG33895	AT2G20000.1	17944809
AT5G27080.1	EES04545	AT3G11830.1	20706207
AT5G27080.1	EES05938	AT3G20050.1	20706207
AT5G27080.1	EER92655	AT5G26360.1	20706207
AT5G27570.1	KXG33895	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30937	Sorghum	nucleus	93.89	94.69
Os02t0700100-01	Rice	extracellular	92.0	93.18
Zm00001d016034_P002	Maize	nucleus	91.37	92.14
TraesCS5A01G272600.1	Wheat	plastid	88.21	89.72
TraesCS5D01G280600.1	Wheat	plastid	87.79	89.1
TraesCS5B01G272800.1	Wheat	plastid	87.37	88.68
TraesCS6B01G296200.1	Wheat	plastid	88.0	88.19
TraesCS6D01G246000.1	Wheat	plastid	88.0	88.0
TraesCS6A01G268900.1	Wheat	plastid	87.79	87.97
OQU82251	Sorghum	cytosol	30.95	84.0
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	76.63	76.63
VIT_15s0107g00320.t01	Wine grape	nucleus	71.37	75.33
Solyc03g096870.2.1	Tomato	nucleus	70.95	74.39
PGSC0003DMT400001467	Potato	nucleus	70.95	74.39
PGSC0003DMT400069533	Potato	nucleus, plastid	71.16	74.29
Solyc06g072830.2.1	Tomato	nucleus, plastid	70.95	74.07
AT4G33260.1	Thale cress	nucleus	68.0	72.26
VIT_05s0029g01120.t01	Wine grape	nucleus	62.11	71.43
VIT_05s0102g00550.t01	Wine grape	nucleus	62.11	71.43
VIT_05s0102g00640.t01	Wine grape	nucleus	61.89	71.19
AT4G33270.1	Thale cress	nucleus	68.42	71.12
VIT_05s0102g00680.t01	Wine grape	nucleus	61.89	70.84
Bra037011.1-P	Field mustard	nucleus	62.32	70.64
VIT_16s0039g02510.t01	Wine grape	nucleus	65.05	68.51
KXG27036	Sorghum	cytosol	26.11	68.51
Bra005544.1-P	Field mustard	nucleus	62.95	68.11
Bra034555.1-P	Field mustard	nucleus	53.89	67.55
AT5G27570.1	Thale cress	nucleus	62.95	66.44
AT5G27080.1	Thale cress	nucleus	61.47	66.06
AT5G26900.1	Thale cress	nucleus	61.68	65.99
PGSC0003DMT400047585	Potato	nucleus	61.26	64.96
Solyc08g005420.2.1	Tomato	nucleus	60.84	64.51
HORVU6Hr1G068080.3	Barley	plastid	70.95	63.23
Bra008327.1-P	Field mustard	cytosol, mitochondrion	55.16	61.22
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	50.53	56.07
KRH08491	Soybean	cytosol	15.37	52.14
VIT_16s0039g02620.t01	Wine grape	cytosol	25.26	51.72
Bra011430.1-P	Field mustard	cytosol	68.84	45.73
CDX98239	Canola	nucleus	12.84	45.52
EES02145	Sorghum	plastid	40.0	39.42
OQU93351	Sorghum	nucleus	39.58	27.01

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	EntrezGene:8080373	InterPro:Apc4_WD40_dom	UniProt:C5XZL9	InterPro:Cdc20/Fizzy
EnsemblPlants:EES06634	ProteinID:EES06634	ProteinID:EES06634.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538
GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918
PANTHER:PTHR19918:SF30	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	EnsemblPlantsGene:SORBI_3004G119700	SUPFAM:SSF50998	UniParc:UPI0001A85EC3
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	RefSeq:XP_002453658.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:12820077..12823122

Molecular Weight (calculated)

51827.9 Da

IEP (calculated)

7.662

GRAVY (calculated)

-0.429

Length

475 amino acids

Sequence
(BLAST)

001: MDAGTYSISS EKSHKAAKAA AAPRPPLQEA GSQPYMPSLS TGSRNPSAKC YGDRFIPDRS AMDMDVAQYL LTEPRKDKEN AAAAASPSKE MYRRLLAEKL
101: LNNRTRILAF RNKPPEPENV SATIAASAHH AKPAKQRRHI PQSAERTLDA PELVDDYYLN LLDWGSNNVL SIALGDTVYL WDASTGSTSE LVTIDEDSGP
201: ITSVSWAPDG KHIAVGLNSS DVQLWDTSSN RLLRTLRGVH EARVGSLAWN NSILTTGGMD GKIVNNDVRI RNHVVQTYEG HSQEVCGLKW SGSGQQLASG
301: GNDNLLHIWD VSMASSMPSA GRNQWLHRLE DHTAAVKALA WCPFQSNLLA TGGGGSDRCI KFWNTHTGAC LNSVDTGSQV CALLWNKNER ELLSSHGFTQ
401: NQLTLWKYPS MVKMAELTGH TSRVLFMAQS PDGCTVASAA ADETLRFWNV FGAPEAPKPV KASHTGMFNS FNHIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.