Factsheet for Solyc06g072830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069533	Potato	nucleus, plastid	98.02	98.02
Solyc03g096870.2.1	Tomato	nucleus	90.11	90.51
VIT_15s0107g00320.t01	Wine grape	nucleus	84.62	85.56
KRH77717	Soybean	nucleus	80.88	80.88
KRH27762	Soybean	nucleus	79.78	79.78
OQU82251	Sorghum	cytosol	29.23	76.0
TraesCS5A01G272600.1	Wheat	plastid	75.16	73.23
TraesCS5D01G280600.1	Wheat	plastid	74.95	72.86
TraesCS5B01G272800.1	Wheat	plastid	74.95	72.86
TraesCS6B01G296200.1	Wheat	plastid	75.82	72.78
Os02t0700100-01	Rice	extracellular	74.95	72.71
KXG30937	Sorghum	nucleus	74.95	72.4
TraesCS6A01G268900.1	Wheat	plastid	75.38	72.36
TraesCS6D01G246000.1	Wheat	plastid	75.38	72.21
EES06634	Sorghum	nucleus	74.07	70.95
Zm00001d016034_P002	Maize	nucleus	72.97	70.49
Zm00001d000168_P001	Maize	plastid	73.85	70.44
Solyc08g005420.2.1	Tomato	nucleus	68.79	69.87
Os04t0599800-01	Rice	nucleus	74.95	67.66
TraesCS2D01G438800.1	Wheat	nucleus	70.55	65.91
TraesCS2B01G461400.1	Wheat	nucleus	70.55	65.64
TraesCS2A01G440000.2	Wheat	nucleus	69.01	64.08
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	66.15	63.24
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	65.93	63.03
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	65.93	63.03
KXG27036	Sorghum	cytosol	24.62	61.88
TraesCS6A01G085400.1	Wheat	nucleus	51.87	61.78
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	64.4	61.68
Os09t0242300-00	Rice	plastid	62.42	59.41
HORVU5Hr1G041780.3	Barley	plastid	65.27	54.9
HORVU6Hr1G068080.3	Barley	plastid	64.18	54.78
Zm00001d017725_P001	Maize	mitochondrion	32.75	47.6
Zm00001d005562_P001	Maize	plastid	20.66	45.41
Solyc03g095210.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	41.54	41.09
Solyc12g056490.1.1	Tomato	nucleus, plastid	41.1	38.88
Solyc08g080080.2.1	Tomato	nucleus, plastid	40.88	38.67
Solyc06g043150.2.1	Tomato	nucleus, plastid	41.54	37.88
TraesCS2D01G118700.1	Wheat	cytosol	15.38	33.33
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	9.67	30.14
Zm00001d006622_P001	Maize	golgi	16.48	22.19
TraesCS2D01G438900.1	Wheat	mitochondrion	1.1	1.23
TraesCS2B01G461500.1	Wheat	mitochondrion	1.1	1.22

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:K4C903	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc06g072830.2
EnsemblPlants:Solyc06g072830.2.1	UniParc:UPI00027659BD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:44915634..44918364

Molecular Weight (calculated)

50405.0 Da

IEP (calculated)

8.159

GRAVY (calculated)

-0.586

Length

455 amino acids

Sequence
(BLAST)

001: MDAGSLSSVS ASKNKSRCPL QEQYLQKRNS RDNLDRFIPN RSAMDMDYAH YMLTEGRKGK ENPAVDSPSR EAYRKQLAET FNMNRSRILA FKNKPPTSVE
101: GIPNDFSSSV HQQAKTAKPR RYIPQTSERT LDAPDLVDDY YLNLLDWGSS NVLSIALGST VYLWDASDGA TSELVTVDEE HGPVTSVKWA PDGRHIALGL
201: NNSDVQLWDT TANRLLRTMR GGHRSRVGAL DWNNHLLTTG GMDGQIRNND VRVRSPIVDT YQGHNQEVCG LKWSASGQQL ASGGNDNLLH IWDRSMASSN
301: TSTEWLHRLE DHTAAVKALA WCPFQGNLLA SGGGGGDRSI KFWNTHTGAC LNSIDTGSQV CALLWNKNER ELLSSHGFTK NQLTLWKYPS MVKTAELTGH
401: TSRVLFMAQS PDGCTVASAA GDETLRFWNV FGTPEVAKPA PKANTEPFAH LNRIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.