Factsheet for Solyc12g056490.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g067490.2.1
Solyc01g090750.2.1
Solyc01g102560.2.1
Solyc01g102570.2.1
Solyc01g102590.2.1
Solyc01g102600.2.1
Solyc02g079050.2.1
Solyc03g061590.2.1
Solyc03g113740.2.1
Solyc03g118190.2.1
Solyc05g007750.2.1
Solyc05g056310.2.1
Solyc06g065520.2.1
Solyc06g076150.2.1
Solyc07g009140.2.1
Solyc07g054690.1.1
Solyc08g067190.2.1
Solyc10g080400.1.1
Solyc10g086400.1.1
Solyc11g040340.1.1
Solyc11g069340.1.1
Solyc11g073280.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22910.1	Solyc08g067190.2.1	AT1G06590.1	20706207
AT4G22910.1	Solyc11g040340.1.1	AT1G71380.1	20706207
AT4G22910.1	Solyc05g007750.2.1	AT2G04660.1	20706207
AT4G22910.1	Solyc03g061590.2.1	AT2G20000.1	17944809
AT4G22910.1	Solyc03g061590.2.1	AT2G20000.1	20706207
AT4G22910.1	Solyc11g069340.1.1	AT2G28450.1	20706207
AT4G22910.1	Solyc01g067490.2.1	AT2G39090.1	20706207
AT4G22910.1	Solyc10g080400.1.1	AT2G42260.1	21798944
AT4G22910.1	Solyc06g065520.2.1	AT3G11830.1	20706207
AT4G22910.1	Solyc01g090750.2.1	AT3G20050.1	20706207
AT4G22910.1	Solyc03g113740.2.1	AT3G48150.1	20706207
AT4G22910.1	Solyc01g102560.2.1	AT3G56150.1	20706207
AT4G22910.1	Solyc01g102570.2.1	AT3G56150.1	20706207
AT4G22910.1	Solyc01g102590.2.1	AT3G56150.1	20706207
AT4G22910.1	Solyc01g102600.2.1	AT3G56150.1	20706207
AT4G22910.1	Solyc06g076150.2.1	AT3G56150.1	20706207
AT4G22910.1	Solyc02g079050.2.1	AT4G21530.1	20706207
AT4G22910.1	Solyc07g009140.2.1	AT4G24820.1	20706207
AT4G22910.1	Solyc07g054690.1.1	AT4G28230.1	20706207
AT4G22910.1	Solyc10g086400.1.1	AT5G02530.1	20706207
AT4G22910.1	Solyc11g073280.1.1	AT5G02530.1	20706207
AT4G22910.1	Solyc03g118190.2.1	AT5G07310.1	20706207
AT4G22910.1	Solyc05g056310.2.1	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027994	Potato	nucleus, plastid	97.51	96.5
Solyc08g080080.2.1	Tomato	nucleus, plastid	80.25	80.25
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	73.39	78.1
KRH57275	Soybean	nucleus	71.93	75.38
Bra019347.1-P	Field mustard	nucleus, plastid	70.48	72.13
KRH77460	Soybean	nucleus, plastid	68.4	71.68
CDY10820	Canola	nucleus, plastid	69.85	71.49
Bra013655.1-P	Field mustard	nucleus, plastid	69.85	71.34
CDY41283	Canola	nucleus, plastid	69.85	71.34
AT4G22910.1	Thale cress	nucleus, plastid	71.31	71.01
GSMUA_Achr11P...	Banana	plastid	69.23	68.52
CDX94136	Canola	nucleus, plastid	53.85	67.8
KRH04001	Soybean	mitochondrion	73.18	66.92
Zm00001d027430_P001	Maize	plastid	69.02	64.59
Zm00001d048472_P001	Maize	nucleus, plastid	68.81	63.65
GSMUA_Achr11P...	Banana	plastid	64.66	63.34
KRH27985	Soybean	nucleus, plastid	58.84	62.33
TraesCS4B01G346200.2	Wheat	nucleus, plastid	66.11	61.99
TraesCS4D01G341200.1	Wheat	nucleus, plastid	65.9	61.91
Os03t0123300-01	Rice	plastid	66.94	61.57
TraesCS7B01G353500.1	Wheat	plastid	50.31	59.75
TraesCS1B01G166800.1	Wheat	cytosol	51.98	59.1
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	66.11	56.48
CDY71640	Canola	nucleus, plastid	27.65	55.42
Solyc06g043150.2.1	Tomato	nucleus, plastid	56.96	54.91
OQU93351	Sorghum	nucleus	69.44	47.99
Solyc03g096870.2.1	Tomato	nucleus	39.71	42.16
Solyc06g072830.2.1	Tomato	nucleus, plastid	38.88	41.1
Solyc08g005420.2.1	Tomato	nucleus	36.38	39.06
Solyc03g095210.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	30.98	32.39

Protein Annotations

MapMan:13.3.4.1.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:K4DFY0	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF31	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc12g056490.1
EnsemblPlants:Solyc12g056490.1.1	UniParc:UPI000276A034	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:62429365..62433956

Molecular Weight (calculated)

53135.3 Da

IEP (calculated)

9.481

GRAVY (calculated)

-0.549

Length

481 amino acids

Sequence
(BLAST)

001: MENPSSNSME PQTPFDPNSN MNPKTPSKTN LIPGFNSYHP SPSRSIYSDR FIPSRTSSNF ALFGLPLSPK SSNTEDSNSG YTSLLRTALF GPDSGNVVNP
101: VTPEKGVRGN GRNLKRPNCN IFRYKTETRQ RLDSLLPYEF DDQMRGVSTS PVKVPRKVPK SPYKVLDAPA LQDDFYLNLV DWSSQNVLAV GLGSSVYLWH
201: ASNGKVVKLC DLENDDNVTS VGWAQRGTHL AVGTSNGKVQ LWDASHGKMT RTMEGHRLRV GALSWSSSQL SSGSRDKSIL QRDIRAQDDY VSKLSGHKSE
301: VCGLKWSPDS RELASGGNDN RLFVWNNHST QPILKYCEHT AAVKAIAWSP HLHGLLASGG GTADRCIRFW NTTTNTHLSC MDTGSQVCNL VWSKNANELV
401: STHGYSQNQI ILWRYPTMTK VATLTGHTYR VLYLAISPDG QMIVTGAGDE TLRFWNVFPS PKSQNTESEI GASSLGRTQI R

Best Arabidopsis Sequence Match ( AT4G22910.1 )
(BLAST)

001: MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR

Arabidopsis Description

FZR2FZR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.