CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92501
KRG95339
KRG96284
KRG97883
KRG99106
KRH01617
KRH03906
KRH05109
KRH07006
KRH08242
KRH09301
KRH11210
KRH14509
KRH16010
KRH21040
KRH23040
KRH24006
KRH24828
KRH25124
KRH26168
KRH27971
KRH28989
KRH29310
KRH29829
KRH30550
KRH30995
KRH32716
KRH32877
KRH38791
KRH41728
KRH42973
KRH49548
KRH49954
KRH51329	endoplasmic reticulum
KRH52488
KRH52489
KRH54084
KRH55075
KRH57185
KRH57190
KRH59103
KRH60628	endoplasmic reticulum
KRH63877
KRH63879
KRH67023
KRH68026
KRH69898
KRH70494
KRH72142
KRH73622
KRH74904
KRH75241
KRH76467
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11920.1	KRH14509	AT1G06590.1	20706207
AT4G11920.1	KRH73622	AT1G06590.1	20706207
AT4G11920.1	KRH51329	AT1G20610.1	20407024
AT4G11920.1	KRH60628	AT1G20610.1	20407024
AT4G11920.1	KRH28989	AT1G31760.1	20706207
AT4G11920.1	KRH76467	AT1G31760.1	20706207
AT4G11920.1	KRH26168	AT1G78770.1	20706207
AT4G11920.1	KRH55075	AT1G78770.1	20706207
AT4G11920.1	KRG97883	AT2G04660.1	20706207
AT4G11920.1	KRH30995	AT2G04660.1	20706207
AT4G11920.1	KRH32716	AT2G04660.1	20706207
AT4G11920.1	KRH74904	AT2G04660.1	20706207
AT4G11920.1	KRG99106	AT2G18290.1	20706207
AT4G11920.1	KRH08242	AT2G18290.1	20706207
AT4G11920.1	KRH49548	AT2G18290.1	20706207
AT4G11920.1	KRH69898	AT2G18290.1	20706207
AT4G11920.1	KRH41728	AT2G20000.1	17944809
AT4G11920.1	KRH41728	AT2G20000.1	20706207
AT4G11920.1	KRH25124	AT2G27970.1	20706207
AT4G11920.1	KRH30550	AT2G27970.1	20706207
AT4G11920.1	KRH11210	AT2G39090.1	20706207
AT4G11920.1	KRH21040	AT2G39090.1	20706207
AT4G11920.1	KRG96284	AT3G11760.1	20706207
AT4G11920.1	KRH32877	AT3G11760.1	20706207
AT4G11920.1	KRH68026	AT3G11760.1	20706207
AT4G11920.1	KRH72142	AT3G11760.1	20706207
AT4G11920.1	KRH42973	AT3G20050.1	20706207
AT4G11920.1	KRH59103	AT3G20050.1	20706207
AT4G11920.1	KRH24006	AT3G48150.1	20706207
AT4G11920.1	KRH27971	AT3G48150.1	20706207
AT4G11920.1	KRH29310	AT3G48150.1	20706207
AT4G11920.1	KRH77487	AT3G48150.1	20706207
AT4G11920.1	KRG95339	AT3G57860.1	20706207
AT4G11920.1	KRH67023	AT3G57860.1	20706207
AT4G11920.1	KRH49954	AT4G21530.1	20706207
AT4G11920.1	KRH03906	AT4G24820.1	20706207
AT4G11920.1	KRH57185	AT4G24820.1	20706207
AT4G11920.1	KRH57190	AT4G24820.1	20706207
AT4G11920.1	KRH01617	AT5G02530.1	20706207
AT4G11920.1	KRH07006	AT5G02530.1	20706207
AT4G11920.1	KRH23040	AT5G02530.1	20706207
AT4G11920.1	KRH24828	AT5G02530.1	20706207
AT4G11920.1	KRH29829	AT5G02530.1	20706207
AT4G11920.1	KRH70494	AT5G02530.1	20706207
AT4G11920.1	KRH75241	AT5G02530.1	20706207
AT4G11920.1	KRH54084	AT5G07310.1	20706207
AT4G11920.1	KRH63877	AT5G07310.1	20706207
AT4G11920.1	KRH63879	AT5G07310.1	20706207
AT4G11920.1	KRH05109	AT5G25460.1	20706207
AT4G11920.1	KRH16010	AT5G25460.1	20706207
AT4G11920.1	KRH52488	AT5G25460.1	20706207
AT4G11920.1	KRH52489	AT5G25460.1	20706207
AT4G11920.1	KRG92501	AT5G26360.1	20706207
AT4G11920.1	KRH09301	AT5G26360.1	20706207
AT4G11920.1	KRH38791	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27985	Soybean	nucleus, plastid	82.79	83.7
KRH57275	Soybean	nucleus	77.56	77.56
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	73.86	75.0
PGSC0003DMT400058525	Potato	nucleus, plastid	75.6	72.59
Solyc08g080080.2.1	Tomato	nucleus, plastid	75.38	71.93
CDX94473	Canola	nucleus	71.68	69.7
AT4G11920.1	Thale cress	nucleus	72.11	69.68
GSMUA_Achr11P...	Banana	plastid	73.2	69.14
CDX86737	Canola	nucleus	71.24	68.84
Bra029426.1-P	Field mustard	nucleus	71.24	68.84
Solyc12g056490.1.1	Tomato	nucleus, plastid	71.68	68.4
KRH04001	Soybean	mitochondrion	78.21	68.25
Bra000756.1-P	Field mustard	nucleus	69.72	68.09
CDY51550	Canola	nucleus	67.32	68.06
CDX90811	Canola	nucleus	66.88	67.77
PGSC0003DMT400027994	Potato	nucleus, plastid	71.46	67.49
GSMUA_Achr11P...	Banana	plastid	69.28	64.77
Zm00001d027430_P001	Maize	plastid	70.37	62.84
Zm00001d048472_P001	Maize	nucleus, plastid	70.81	62.5
Os03t0123300-01	Rice	plastid	70.59	61.95
TraesCS4D01G341200.1	Wheat	nucleus, plastid	68.63	61.52
TraesCS4B01G346200.2	Wheat	nucleus, plastid	67.97	60.82
TraesCS1B01G166800.1	Wheat	cytosol	54.68	59.34
TraesCS7B01G353500.1	Wheat	plastid	51.85	58.77
KRG97899	Soybean	plastid	59.91	56.24
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	68.85	56.13
KRH30985	Soybean	plastid	59.7	54.8
OQU93351	Sorghum	nucleus	71.24	46.98
KRH27762	Soybean	nucleus	42.27	42.64
KRH77717	Soybean	nucleus	42.05	42.42
KRH44738	Soybean	nucleus	38.56	40.05
KRH68047	Soybean	nucleus	39.87	40.04
KRH70386	Soybean	cytosol	24.62	39.1
KRG94456	Soybean	cytosol	18.74	36.6
KRH08491	Soybean	cytosol	10.89	35.71
KRH33341	Soybean	nucleus	34.42	34.96
KRH07005	Soybean	nucleus	8.06	29.84

Protein Annotations

EntrezGene:100785726	MapMan:13.3.4.1.3	Gene3D:2.130.10.10	EMBL:ACUP02000673	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy
EnsemblPlantsGene:GLYMA_01G214500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027
GO:GO:1904668	UniProt:I1JA18	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH77460
ProteinID:KRH77460	ProteinID:KRH77460.1	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF31	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023374FC
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:54544024..54549432

Molecular Weight (calculated)

50991.9 Da

IEP (calculated)

9.231

GRAVY (calculated)

-0.481

Length

459 amino acids

Sequence
(BLAST)

001: MDESFTPAPP PPPMSLSRHD HVQRMINSKR YKSPSKTIYS DRFIPSRSGS NFDLFNLPSP SSSEDSCSCS PYSTALRRAL FGPDTPDKFE SPNIFRYKTE
101: TRKSMYSLSP TPFTSQDDLL PGYDNNHKPP KRPRKIPPSS FKVLDAPALQ DDFYLNLVDW SSNNILAVAL ENSVYLWNAS SSKVTKLCDL GIDDSVCSVG
201: WAPLGTYLSV GSNSGKVQIW DVSQGKSIRT MEGHRLRVGA LAWSSSLLSS GGRDKSIYQR DIRAQEDFVS KLSGHKSEVC GLKWSYDNRE LASGGNDNRL
301: LVWNQKSTQP VLKFCEHTAA VKAIAWSPHV NGLLASGGGT VDRNIRFWNT TTNSQLNCID TGSQVCNLVW SKNVNELVST HGYSQNQIIV WKYPTMSKLA
401: TLTGHTYRVL YLAISPDGQT IVTGAGDETL RFWNVFPSRK SQNTESEIGA SSFGRTIIR

Best Arabidopsis Sequence Match ( AT4G22910.1 )
(BLAST)

001: MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR

Arabidopsis Description

FZR2FZR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.