CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27762	Soybean	nucleus	98.02	98.02
Solyc03g096870.2.1	Tomato	nucleus	82.42	82.78
PGSC0003DMT400001467	Potato	nucleus	82.2	82.56
VIT_15s0107g00320.t01	Wine grape	nucleus	81.1	82.0
PGSC0003DMT400069533	Potato	nucleus, plastid	81.32	81.32
Solyc06g072830.2.1	Tomato	nucleus, plastid	80.88	80.88
KRH68047	Soybean	nucleus	74.73	74.4
KRH44738	Soybean	nucleus	70.99	73.08
KRG94456	Soybean	cytosol	36.48	70.64
KRH07005	Soybean	nucleus	14.73	54.03
KRH08491	Soybean	cytosol	16.48	53.57
KRH70386	Soybean	cytosol	28.35	44.64
KRH77460	Soybean	nucleus, plastid	42.42	42.05
KRH33341	Soybean	nucleus	41.32	41.59
KRH57275	Soybean	nucleus	41.54	41.18
KRG97899	Soybean	plastid	41.98	39.06
KRH30985	Soybean	plastid	42.2	38.4
KRH27985	Soybean	nucleus, plastid	36.26	36.34
KRH04001	Soybean	mitochondrion	41.76	36.12

Protein Annotations

EntrezGene:100784841	MapMan:13.3.4.1.4	Gene3D:2.130.10.10	EMBL:ACUP02000683	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy
ncoils:Coil	EnsemblPlantsGene:GLYMA_01G229600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234
GO:GO:0097027	GO:GO:1904668	UniProt:I1JAI7	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRH77717	ProteinID:KRH77717	ProteinID:KRH77717.1	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0001BA87B1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:55732387..55735277

Molecular Weight (calculated)

50326.9 Da

IEP (calculated)

7.630

GRAVY (calculated)

-0.527

Length

455 amino acids

Sequence
(BLAST)

001: MDAGSLSSSG TLKTRSRYPL QEQFIQRKSS KENLDRFIPN RSAMDFDYAH YMLTEGNKGK ENPDVCSPSR EAYRKQLAES LNMNRTRILA FKNKPPAPVD
101: LIPHEMSTHT HDNKPAKPKR FIPQTSEKTL DAPDLVDDYY LNLLDWGSAN VLAIALGSTV YLWDATNGST SELVTVDDED GPVTSLSWAP DGRHIAVGLN
201: NSEVQLWDTT SNRQLRTLRG GHRQRVGSLA WNNHILTTGG MDGRIVNNDV RIRSHVVETY SGHEQEVCGL KWSASGSQLA SGGNDNLLYI WDRATASSNS
301: ATQWLHRLED HTSAVKALAW CPFQGNLLAS GGGSGDRCIK FWNTHTGACL NSIDTGSQVC SLLWNKNERE LLSSHGFTQN QLTLWKYPSM VKMAELTGHT
401: SRVLFMAQSP DGCTVASAAA DETLRFWNVF GAPEAASKAA PKARAEPFSN VNRIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.