CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33341	Soybean	nucleus	88.58	56.64
VIT_16s0013g00280.t01	Wine grape	nucleus	61.25	38.9
GSMUA_Achr10P...	Banana	nucleus	50.17	35.63
Solyc03g095210.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	55.71	35.0
PGSC0003DMT400013474	Potato	cytosol	56.75	34.45
GSMUA_Achr11P...	Banana	mitochondrion	46.71	31.99
KRG94456	Soybean	cytosol	23.88	29.36
KRH27762	Soybean	nucleus	45.33	28.79
KRH77717	Soybean	nucleus	44.64	28.35
KRH44738	Soybean	nucleus	43.25	28.28
KRH68047	Soybean	nucleus	41.52	26.26
KRH57275	Soybean	nucleus	39.1	24.62
KRH77460	Soybean	nucleus, plastid	39.1	24.62
KRG97899	Soybean	plastid	38.06	22.49
KRH27985	Soybean	nucleus, plastid	34.95	22.25
KRH30985	Soybean	plastid	38.41	22.2
KRH04001	Soybean	mitochondrion	39.45	21.67
KRH07005	Soybean	nucleus	5.88	13.71
KRH08491	Soybean	cytosol	5.54	11.43

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02000769	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	EnsemblPlantsGene:GLYMA_02G087600
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K7K771	EnsemblPlants:KRH70386	ProteinID:KRH70386
ProteinID:KRH70386.1	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19918	PANTHER:PTHR19918:SF15	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI000296B966
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	:	:

Description

hypothetical protein

Coordinates

chr2:+:7654684..7657599

Molecular Weight (calculated)

32294.3 Da

IEP (calculated)

8.176

GRAVY (calculated)

-0.277

Length

289 amino acids

Sequence
(BLAST)

001: MMLFSRHQKE SRILDAQNIR NDFYSNIMDW GENNILANSN VFKLFKATNN KFPTSVSWSE DTNYLAIGYM NSELQLWDAE TSKPIRILQV RATNNVISWV
101: KAHKAEVCGL KWTRGNILAS GGNENHVYVW DLAKRSSSNF LHCFKDHCAA VKALSWCPYD SSVLASGGGT EDRSIKLWNV KKGTIICSID PKALVCGLEW
201: NRHHKELLSG HGFSTSAHHN QLCMWTHPSM TKVGGLDCHA SRVLHLCQSP DGLTVVSVGA DKTLRFSDVF GPPVNNTSEI SNLDNLLSL

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.