Factsheet for PGSC0003DMT400013474

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g095210.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	92.02	95.22
VIT_16s0013g00280.t01	Wine grape	nucleus	60.71	63.52
KRH33341	Soybean	nucleus	56.09	59.07
KRH70386	Soybean	cytosol	34.45	56.75
GSMUA_Achr10P...	Banana	nucleus	45.17	52.83
GSMUA_Achr11P...	Banana	mitochondrion	43.91	49.53
PGSC0003DMT400001467	Potato	nucleus	40.97	43.05
PGSC0003DMT400069533	Potato	nucleus, plastid	40.76	42.64
PGSC0003DMT400047585	Potato	nucleus	39.92	42.41
PGSC0003DMT400058525	Potato	nucleus, plastid	31.3	31.17
PGSC0003DMT400027994	Potato	nucleus, plastid	31.72	31.07
PGSC0003DMT400076326	Potato	nucleus, plastid	32.56	30.88

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M1A2W4	PFAM:PF00400	PFAM:PF12894	EnsemblPlantsGene:PGSC0003DMG400005257	PGSC:PGSC0003DMG400005257
EnsemblPlants:PGSC0003DMT400013474	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF15
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000294F575	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

Cell division cycle [Source:PGSC_GENE;Acc:PGSC0003DMG400005257]

Coordinates

chr3:+:36647875..36649954

Molecular Weight (calculated)

53473.1 Da

IEP (calculated)

8.413

GRAVY (calculated)

-0.486

Length

476 amino acids

Sequence
(BLAST)

001: MNDNSLTRIQ PDWYSPTRLH DTPLDNDFPG DRFIPNRSLM DLDQAHTLLT NRTNNKLRKP NFNDEYRRKM EENLKLDVEG RPFRMLVFRG SPKSSRQSTR
101: LIDEMRRSDK EIPLQINENR RYRKYPLKAT RALDAPLLSD DYYSNVMDWG KSNILAVVLG SILYIWNAQV QKAGVLMEVK RENDCPTSVA WSADGKIVAV
201: GCDSSKLQLW DAETSRLVRD LQGHQSRVGC VSWNGHILTS GSKDRAIINH DVRARSNLVS VTRAHRGEVC GVKWSSTGNA LASGGNDNLV YIWDSFKTSS
301: RHYMHRFNEH HAAVKALAWC PYSSDVLASG GGIDDGCLKI WNTQKGTCIS TNETGAQASF NITFAIFLSN AISICGLQWN RHHKEILSGH GFGTGESHCQ
401: LCLWSYPSMA RIGEPLRHAS SSRILHLSQS PDGLTVVSAG ADETLRFWEI FGPPQESSEN ITHLDDLLSL KASAVR

Best Arabidopsis Sequence Match ( AT5G27570.1 )
(BLAST)

001: MMNTSSHLKA QASCPLVEHF LRRKLSKENF DRFIPNRSAM DFDFANYALT QGRKRNVDEV TSASRKAYMT QLAEAMNQNR TRILAFRNKP KALLSSNHSD
101: PPHQQPISVK PRRYIPQNSE RVLDAPGIAD DFYLNLLDWG SSNVLAIALG DTVYLWDASS GSTYKLVTID EEEGPVTSIN WTQDGLDLAI GLDNSEVQLW
201: DCVSNRQVRT LRGGHESRVG SLAWNNHILT TGGMDGKIVN NDVRIRSSIV ETYLGHTEEV CGLKWSESGK KLASGGNDNV VHIWDHRSVA SSNPTRQWLH
301: RFEEHTAAVR ALAWCPFQAS LLATGGGVGD GKIKFWNTHT GACLNSVETG SQVCSLLWSK SERELLSSHG FTQNQLTLWK YPSMVKMAEL NGHTSRVLFM
401: AQSPDGCTVA SAAGDETLRL WNVFGEPPKT TKKAASKKYT DPFAHVNHIR

Arabidopsis Description

CDC20-5Transducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G27570]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.