Factsheet for GSMUA_Achr10P07570_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	73.46	70.85
VIT_16s0013g00280.t01	Wine grape	nucleus	56.51	50.55
KRH70386	Soybean	cytosol	35.63	50.17
GSMUA_Achr1P27670_001	Banana	cytosol	7.62	49.21
KRH33341	Soybean	nucleus	52.09	46.9
Solyc03g095210.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	52.83	46.74
GSMUA_AchrUn_...	Banana	cytosol	9.83	45.98
PGSC0003DMT400013474	Potato	cytosol	52.83	45.17
GSMUA_Achr1P27660_001	Banana	mitochondrion	17.2	43.48
GSMUA_AchrUn_...	Banana	cytosol	25.31	43.1
GSMUA_Achr5P18020_001	Banana	nucleus, plastid	48.4	41.65
GSMUA_Achr11P...	Banana	plastid	47.67	40.93
GSMUA_Achr1P25940_001	Banana	cytosol	29.24	40.07
GSMUA_Achr8P14580_001	Banana	nucleus, plastid	47.17	39.92
GSMUA_AchrUn_...	Banana	nucleus	39.8	39.42
GSMUA_AchrUn_...	Banana	cytosol	34.89	39.01
GSMUA_Achr1P28050_001	Banana	cytosol	37.84	37.84
GSMUA_AchrUn_...	Banana	cytosol	28.01	37.38
GSMUA_Achr3P21370_001	Banana	cytosol	36.36	37.28
GSMUA_Achr5P07090_001	Banana	plastid	37.59	33.7
GSMUA_Achr11P...	Banana	plastid	38.33	32.1
GSMUA_Achr11P...	Banana	plastid	36.36	30.14
GSMUA_Achr2P19120_001	Banana	cytosol	19.16	29.21
GSMUA_AchrUn_...	Banana	cytosol	20.39	29.02

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538
GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSMUA_Achr10G07570_001	EnsemblPlants:GSMUA_Achr10P07570_001	EnsemblPlants:GSMUA_Achr10T07570_001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0RG83	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF15	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00029521BA	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

WD repeat-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G07570_001]

Coordinates

chr10:+:17755293..17757034

Molecular Weight (calculated)

45885.1 Da

IEP (calculated)

8.390

GRAVY (calculated)

-0.510

Length

407 amino acids

Sequence
(BLAST)

001: MNLDFARSSL TERRRREPAA IDSPDEYRRR VEENMRLDSE GKPRRMLVFR GSPRNSKPSV LLVDEMMKDQ QARLRPIDRI RHVPKSADRI LDGTALLDDY
101: YLNLMDWGKN NILAVALGRS VYLWNATNNS VQLLLTAADE DDHPTSIAWS MDAKTVAVGF ARSRVEIWDA IELQQVRILE GHSARVGSLS WNQNVLTSGS
201: HDASIINHDV RSSHHLASRL RAHSEEVCGL KWSGGGNLLA SGGNDNLVHV WESSKMGSSK YLHRYSDHCA AVRALAWCPF RSSTLASGGG TADQCIKIWN
301: TQTGKFIEQV CALEWNRHEK EILSAHGYSQ NQLSLWAYPS MTKIADLTGH TARVLHLSQS PDGCTVASAA ADETIRFWKV FEHQPRRGSS KLDDEDRLFS
401: FNRTHIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.