Factsheet for GSMUA_AchrUn_randomP28280_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P19740_001
GSMUA_Achr2P01090_001
GSMUA_Achr2P21510_001
GSMUA_Achr3P19380_001
GSMUA_Achr3P22960_001
GSMUA_Achr5P09040_001
GSMUA_Achr5P26960_001
GSMUA_Achr6P23290_001
GSMUA_Achr8P16590_001
GSMUA_Achr8P30740_001
GSMUA_Achr9P29220_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	GSMUA_Achr9P29220_001	AT1G06590.1	20706207
AT4G33270.1	GSMUA_Achr8P30740_001	AT1G78770.1	20706207
AT4G33270.1	GSMUA_Achr3P19380_001	AT2G04660.1	20706207
AT4G33270.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809
AT4G33270.1	GSMUA_Achr1P19740_001	AT2G20000.1	20706207
AT4G33270.1	GSMUA_Achr5P26960_001	AT2G39090.1	20706207
AT4G33270.1	GSMUA_Achr2P21510_001	AT3G11830.1	20706207
AT4G33270.1	GSMUA_Achr8P16590_001	AT3G11830.1	20706207
AT4G33270.1	GSMUA_Achr11P...	AT3G48150.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr10P...	AT4G21530.1	20706207
AT4G33270.1	GSMUA_Achr3P22960_001	AT4G28230.1	20706207
AT4G33270.1	GSMUA_Achr5P09040_001	AT5G26360.1	20706207
AT4G33270.1	GSMUA_Achr6P23290_001	AT5G26360.1	20706207
AT5G26900.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809
AT5G27080.1	GSMUA_Achr2P21510_001	AT3G11830.1	20706207
AT5G27080.1	GSMUA_Achr8P16590_001	AT3G11830.1	20706207
AT5G27080.1	GSMUA_Achr11P...	AT3G20050.1	20706207
AT5G27080.1	GSMUA_Achr2P01090_001	AT3G20050.1	20706207
AT5G27080.1	GSMUA_Achr5P09040_001	AT5G26360.1	20706207
AT5G27080.1	GSMUA_Achr6P23290_001	AT5G26360.1	20706207
AT5G27570.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	22.3	78.16
GSMUA_Achr1P27660_001	Banana	mitochondrion	40.66	77.02
GSMUA_AchrUn_...	Banana	cytosol	58.36	74.48
GSMUA_Achr1P27670_001	Banana	cytosol	15.08	73.02
GSMUA_Achr1P25940_001	Banana	cytosol	66.56	68.35
GSMUA_AchrUn_...	Banana	cytosol	76.72	64.29
GSMUA_Achr1P28050_001	Banana	cytosol	85.57	64.13
CDY26774	Canola	mitochondrion	19.67	54.55
CDY59111	Canola	nucleus	35.74	50.46
GSMUA_AchrUn_...	Banana	nucleus	66.89	49.63
GSMUA_Achr3P21370_001	Banana	cytosol	61.97	47.61
KRG94456	Soybean	cytosol	33.44	43.4
GSMUA_AchrUn_...	Banana	cytosol	40.66	43.36
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	25.9	40.93
CDY71694	Canola	nucleus	22.95	40.46
CDY13491	Canola	cytosol	40.98	33.97
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	45.25	32.24
AT4G33260.1	Thale cress	nucleus	47.21	32.21
GSMUA_Achr5P18020_001	Banana	nucleus, plastid	49.18	31.71
KRH44738	Soybean	nucleus	45.9	31.67
Bra034555.1-P	Field mustard	nucleus	39.34	31.66
AT4G33270.1	Thale cress	nucleus	47.21	31.51
AT5G27570.1	Thale cress	nucleus	45.9	31.11
Bra008327.1-P	Field mustard	cytosol, mitochondrion	43.28	30.84
AT5G27080.1	Thale cress	nucleus	44.59	30.77
AT5G26900.1	Thale cress	nucleus	44.59	30.63
GSMUA_Achr11P...	Banana	plastid	47.54	30.59
KRH68047	Soybean	nucleus	45.57	30.42
Bra005544.1-P	Field mustard	nucleus	43.28	30.07
GSMUA_Achr8P14580_001	Banana	nucleus, plastid	47.21	29.94
CDY52543	Canola	nucleus	40.98	29.21
Solyc08g005420.2.1	Tomato	nucleus	42.62	29.02
Bra037011.1-P	Field mustard	nucleus	39.67	28.88
PGSC0003DMT400047585	Potato	nucleus	42.3	28.79
CDY59110	Canola	nucleus	39.34	28.64
CDY59109	Canola	nucleus	39.34	28.64
GSMUA_Achr10P...	Banana	nucleus	37.38	28.01
CDX68960	Canola	nucleus	37.38	27.6
CDY44519	Canola	cytosol, nucleus	43.61	25.63
GSMUA_Achr11P...	Banana	mitochondrion	34.75	25.12
GSMUA_Achr5P07090_001	Banana	plastid	33.11	22.25
GSMUA_Achr2P19120_001	Banana	cytosol	18.36	20.97
GSMUA_Achr11P...	Banana	plastid	33.11	20.78
Bra011430.1-P	Field mustard	cytosol	46.89	20.0
GSMUA_Achr11P...	Banana	plastid	30.16	18.74
CDY46124	Canola	cytosol	33.11	16.29
KRH07005	Soybean	nucleus	0.33	0.81
CDY28290	Canola	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSMUA_AchrUn_randomG28280_001	EnsemblPlants:GSMUA_AchrUn_randomP28280_001
EnsemblPlants:GSMUA_AchrUn_randomT28280_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0UD36	PFAM:PF00400
PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF12
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296F37F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

Putative Cell division cycle protein 20 homolog [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG28280_001]

Coordinates

chrchrUn_random:+:137304511..137305923

Molecular Weight (calculated)

33869.3 Da

IEP (calculated)

6.879

GRAVY (calculated)

-0.089

Length

305 amino acids

Sequence
(BLAST)

001: TEDRGPITCI RWSPDCAVLA VAFGNSDLAL IDPATGHVVD GMEDESQAPV LSLAWRSNSI LTVGRFDGTV VDYDFRKDDM FICFYNGHRR GVCSLKWSVL
101: SGRYLASGGQ DKLVHIWDAC MPVSHHHPRQ RQWLHRISSH TSIVKAVDWC PTRSNLLASG GGCNDNCVKF WNTVNGACLN SIDAGSEVCA LLWDKNKSEL
201: LTSHGSPNNQ LTLWNYPSMT RVAEVSGHSS RVLSLAGSPL GGVVASAAAD ETIRFWNIFE TPKITKPELP FAQFNVIFKY ECNRLRFLMI FNMALVSYED
301: ITLHT

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.