Factsheet for AT5G27945.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59111	Canola	nucleus	37.38	74.07
OQU82251	Sorghum	cytosol	29.44	72.0
AT5G27570.1	Thale cress	nucleus	71.03	67.56
AT5G26900.1	Thale cress	nucleus	67.99	65.54
AT5G27080.1	Thale cress	nucleus	67.06	64.93
CDY26774	Canola	mitochondrion	16.59	64.55
CDY71694	Canola	nucleus	25.0	61.85
KRG94456	Soybean	cytosol	33.64	61.28
AT4G33260.1	Thale cress	nucleus	61.45	58.84
AT4G33270.1	Thale cress	nucleus	61.45	57.55
GSMUA_AchrUn_...	Banana	cytosol	11.68	57.47
GSMUA_Achr1P27670_001	Banana	cytosol	8.18	55.56
GSMUA_Achr1P27660_001	Banana	mitochondrion	20.56	54.66
KRH44738	Soybean	nucleus	54.91	53.17
GSMUA_AchrUn_...	Banana	cytosol	29.44	52.72
KXG30937	Sorghum	nucleus	56.78	51.59
Bra005544.1-P	Field mustard	nucleus	52.8	51.48
KRH68047	Soybean	nucleus	54.67	51.2
Os02t0700100-01	Rice	extracellular	55.84	50.96
TraesCS5A01G272600.1	Wheat	plastid	55.37	50.75
Zm00001d016034_P002	Maize	nucleus	55.84	50.74
EES06634	Sorghum	nucleus	56.07	50.53
CDY52543	Canola	nucleus	50.47	50.47
TraesCS5D01G280600.1	Wheat	plastid	55.14	50.43
CDY59110	Canola	nucleus	49.3	50.36
CDY59109	Canola	nucleus	49.3	50.36
TraesCS5B01G272800.1	Wheat	plastid	54.91	50.21
Zm00001d000168_P001	Maize	plastid	55.84	50.1
TraesCS6A01G268900.1	Wheat	plastid	55.37	50.0
TraesCS6D01G246000.1	Wheat	plastid	55.37	49.89
TraesCS6B01G296200.1	Wheat	plastid	54.91	49.58
GSMUA_Achr1P25940_001	Banana	cytosol	34.35	49.49
PGSC0003DMT400047585	Potato	nucleus	51.4	49.11
Bra008327.1-P	Field mustard	cytosol, mitochondrion	49.07	49.07
Solyc08g005420.2.1	Tomato	nucleus	50.47	48.21
TraesCS2B01G461400.1	Wheat	nucleus	54.67	47.85
TraesCS2D01G438800.1	Wheat	nucleus	53.74	47.23
TraesCS2A01G440000.2	Wheat	nucleus	53.97	47.14
Os04t0599800-01	Rice	nucleus	54.44	46.23
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	50.93	45.8
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	50.7	45.59
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	50.47	45.38
GSMUA_AchrUn_...	Banana	cytosol	32.24	45.25
Os09t0242300-00	Rice	plastid	48.36	43.31
HORVU6Hr1G068080.3	Barley	plastid	53.5	42.96
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	46.96	42.32
TraesCS6A01G085400.1	Wheat	nucleus	37.38	41.88
GSMUA_Achr3P21370_001	Banana	cytosol	38.32	41.31
HORVU5Hr1G041780.3	Barley	plastid	50.7	40.11
Zm00001d017725_P001	Maize	mitochondrion	29.21	39.94
CDY44519	Canola	cytosol, nucleus	48.36	39.88
GSMUA_AchrUn_...	Banana	cytosol	33.41	39.29
GSMUA_AchrUn_...	Banana	nucleus	37.62	39.17
GSMUA_Achr1P28050_001	Banana	cytosol	36.68	38.57
AT5G13840.1	Thale cress	plastid	36.92	32.85
AT4G11920.1	Thale cress	nucleus	35.51	32.0
AT4G22910.1	Thale cress	nucleus, plastid	35.51	31.47
GSMUA_AchrUn_...	Banana	cytosol	16.82	25.17
KXG27036	Sorghum	cytosol	10.05	23.76
Zm00001d005562_P001	Maize	plastid	8.18	16.91
TraesCS2D01G118700.1	Wheat	cytosol	7.24	14.76
Zm00001d006622_P001	Maize	golgi	10.75	13.61
KRH07005	Soybean	nucleus	3.27	11.29
CDY28290	Canola	cytosol, mitochondrion, nucleus	3.27	9.59
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	2.57	7.53
TraesCS2D01G438900.1	Wheat	mitochondrion	0.7	0.74
TraesCS2B01G461500.1	Wheat	mitochondrion	0.7	0.73

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	EntrezGene:832862	EMBL:AC007627	ProteinID:AED93749.1	ArrayExpress:AT5G27945
EnsemblPlantsGene:AT5G27945	RefSeq:AT5G27945	TAIR:AT5G27945	RefSeq:AT5G27945-TAIR-G	EnsemblPlants:AT5G27945.1	TAIR:AT5G27945.1
InterPro:Apc4_WD40_dom	Unigene:At.55046	InterPro:Cdc20/Fizzy	UniProt:F4K5R6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0016567
GO:GO:0019538	GO:GO:0030234	GO:GO:0051301	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_568505.1	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF8	SMART:SM00320	SUPFAM:SSF50978
SignalP:SignalP-noTM	UniParc:UPI0000162619	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

CDC20-6Cell division cycle 20.6, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:F4K5R6]

Coordinates

chr5:+:9976007..9977601

Molecular Weight (calculated)

47696.1 Da

IEP (calculated)

6.192

GRAVY (calculated)

-0.275

Length

428 amino acids

Sequence
(BLAST)

001: MMKSIALALC LTHHSPMVLS IVDYGDSQEK TIDSLWKKPH GSDLTWSGFS RVGVTEAYFA VPVDHFLTNP PSLRLSQTIY CRRGSSYVET EKVEEEDRDD
101: FLKQVWFLTD NLVFFFVDIE EYIVIEQLGD TVYLWDASSC YTSKLVTIDD ENGPVTSINW TQDGLDLAVG LDNSEVQVWD CVSNRHVRTL RGGHESRVGS
201: LAWNNHILTT GGMDGKIVNN DVRIRSSIIG TYVGHTEEVC GLKWSESGKK LASGGNDNVV HIWDRSLASS NPTRQWLHRF EEHTAAVRAL AWCPFQASLL
301: ATGGGVGDGK INFWNTHTGA CLNSVETGSQ VCSLLWSKSE RELLSAHGFT QNQLTLWKYP SMVKMAELNG HTSRVLFMAQ SPDGCTVASA AGDETLRLWN
401: VFGEPPKTTK KAASKKYTEP FAHVNHIR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.