Factsheet for Zm00001d017725_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014685_P009
Zm00001d017475_P002
Zm00001d018349_P001
Zm00001d021235_P001
Zm00001d024858_P004
Zm00001d028183_P002
Zm00001d028358_P003
Zm00001d035596_P001
Zm00001d038666_P002
Zm00001d040015_P001
Zm00001d042523_P001
Zm00001d045047_P002
Zm00001d047979_P005
Zm00001d052056_P005
Zm00001d052072_P003
Zm00001d052917_P001
Zm00001d053553_P002
Zm00001d053857_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	Zm00001d021235_P001	AT1G06590.1	20706207
AT4G33270.1	Zm00001d028358_P003	AT1G78770.1	20706207
AT4G33270.1	Zm00001d047979_P005	AT1G78770.1	20706207
AT4G33270.1	Zm00001d014685_P009	AT2G04660.1	20706207
AT4G33270.1	Zm00001d042523_P001	AT2G20000.1	17944809
AT4G33270.1	Zm00001d042523_P001	AT2G20000.1	20706207
AT4G33270.1	Zm00001d024858_P004	AT2G39090.1	20706207
AT4G33270.1	Zm00001d053857_P002	AT3G11830.1	20706207
AT4G33270.1	Zm00001d017475_P002	AT3G48150.1	20706207
AT4G33270.1	Zm00001d035596_P001	AT4G21530.1	20706207
AT4G33270.1	Zm00001d038666_P002	AT4G21530.1	20706207
AT4G33270.1	Zm00001d040015_P001	AT4G21530.1	20706207
AT4G33270.1	Zm00001d045047_P002	AT4G21530.1	20706207
AT4G33270.1	Zm00001d052072_P003	AT4G21530.1	20706207
AT4G33270.1	Zm00001d052917_P001	AT4G21530.1	20706207
AT4G33270.1	Zm00001d028183_P002	AT5G26360.1	20706207
AT4G33270.1	Zm00001d053553_P002	AT5G26360.1	20706207
AT5G26900.1	Zm00001d042523_P001	AT2G20000.1	17944809
AT5G27080.1	Zm00001d053857_P002	AT3G11830.1	20706207
AT5G27080.1	Zm00001d018349_P001	AT3G20050.1	20706207
AT5G27080.1	Zm00001d052056_P005	AT3G20050.1	20706207
AT5G27080.1	Zm00001d028183_P002	AT5G26360.1	20706207
AT5G27080.1	Zm00001d053553_P002	AT5G26360.1	20706207
AT5G27570.1	Zm00001d042523_P001	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0700100-01	Rice	extracellular	57.83	38.59
Zm00001d000168_P001	Maize	plastid	58.47	38.36
Zm00001d016034_P002	Maize	nucleus	57.51	38.22
TraesCS5A01G272600.1	Wheat	plastid	55.59	37.26
TraesCS5D01G280600.1	Wheat	plastid	55.27	36.97
TraesCS5B01G272800.1	Wheat	plastid	55.27	36.97
TraesCS6A01G268900.1	Wheat	plastid	55.59	36.71
TraesCS6B01G296200.1	Wheat	plastid	55.59	36.71
TraesCS6D01G246000.1	Wheat	plastid	55.59	36.63
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	16.29	34.93
Bra037011.1-P	Field mustard	nucleus	46.65	34.84
VIT_15s0107g00320.t01	Wine grape	nucleus	48.56	33.78
AT4G33260.1	Thale cress	nucleus	47.6	33.33
Solyc03g096870.2.1	Tomato	nucleus	48.24	33.33
PGSC0003DMT400001467	Potato	nucleus	48.24	33.33
Solyc06g072830.2.1	Tomato	nucleus, plastid	47.6	32.75
AT4G33270.1	Thale cress	nucleus	47.6	32.6
PGSC0003DMT400069533	Potato	nucleus, plastid	47.28	32.53
VIT_05s0102g00640.t01	Wine grape	nucleus	42.49	32.2
Bra005544.1-P	Field mustard	nucleus	45.05	32.12
VIT_05s0102g00680.t01	Wine grape	nucleus	42.49	32.05
VIT_05s0029g01120.t01	Wine grape	nucleus	42.17	31.96
VIT_16s0039g02510.t01	Wine grape	nucleus	46.01	31.93
VIT_05s0102g00550.t01	Wine grape	nucleus	41.85	31.72
AT5G27570.1	Thale cress	nucleus	45.05	31.33
Bra008327.1-P	Field mustard	cytosol, mitochondrion	42.17	30.84
AT5G26900.1	Thale cress	nucleus	43.13	30.41
Solyc08g005420.2.1	Tomato	nucleus	42.81	29.91
PGSC0003DMT400047585	Potato	nucleus	42.81	29.91
AT5G27080.1	Thale cress	nucleus	41.85	29.64
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	39.94	29.21
Zm00001d005562_P001	Maize	plastid	19.17	28.99
Zm00001d015555_P001	Maize	cytosol	7.03	28.95
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	43.45	28.63
HORVU6Hr1G068080.3	Barley	plastid	45.69	26.83
Bra034555.1-P	Field mustard	nucleus	31.63	26.12
KRH08491	Soybean	cytosol	10.22	22.86
Bra011430.1-P	Field mustard	cytosol	48.24	21.12
Zm00001d041957_P004	Maize	plastid	30.67	19.79
Zm00001d027430_P001	Maize	plastid	30.03	18.29
Zm00001d048472_P001	Maize	nucleus, plastid	30.35	18.27
VIT_16s0039g02620.t01	Wine grape	cytosol	13.42	18.1
GSMUA_Achr2P19120_001	Banana	cytosol	13.42	15.73
CDX98239	Canola	nucleus	6.39	14.93
Zm00001d006622_P001	Maize	golgi	15.34	14.2

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6HH17	ProteinID:AQK73853.1	InterPro:Cdc20/Fizzy	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0051301	GO:GO:0097027	GO:GO:1904668
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000842B777
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d017725
EnsemblPlants:Zm00001d017725_P001	EnsemblPlants:Zm00001d017725_T001	SEG:seg	:	:	:

Description

Cell division cycle 20.1 cofactor of APC complex

Coordinates

chr5:+:205294819..205296713

Molecular Weight (calculated)

33952.8 Da

IEP (calculated)

9.004

GRAVY (calculated)

-0.248

Length

313 amino acids

Sequence
(BLAST)

001: MRLSLDLLRE EPRRCAPAAV AGGGLPPLHA IAELGIPSAK CYGDRFIPHR SAMDMDMAHY LLTEPRKDKE NAAGMVASPS KEAYRRLLRG SCSTTGHGSS
101: PSGTSCQNPR TCLSPMSLPP TMRTAVLLPA LARLLMSRTL RGVLEARVGS LAWNNSILST GGMDGKIVNN DVRIRNHVVQ TYKGHSQEVC GLKWSGSGQQ
201: LASEGNDDLV HIWDVLMASS LPSAGHNQWL HRLEDHVAAV KALAWWQRSV HQILAHTHCS CMVKLQSPDG CTVASAAADE TLRFWNVFGA PETPKPAAKA
301: SHTGTFNSFN HIR

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.