Factsheet for VIT_05s0102g00680.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0102g00640.t01	Wine grape	nucleus	97.59	98.06
VIT_05s0102g00550.t01	Wine grape	nucleus	96.39	96.85
VIT_05s0029g01120.t01	Wine grape	nucleus	95.42	95.88
VIT_15s0107g00320.t01	Wine grape	nucleus	80.96	74.67
VIT_16s0039g02510.t01	Wine grape	nucleus	80.72	74.28
OQU82251	Sorghum	cytosol	30.12	71.43
TraesCS5A01G272600.1	Wheat	plastid	72.29	64.24
TraesCS5D01G280600.1	Wheat	plastid	72.29	64.1
TraesCS5B01G272800.1	Wheat	plastid	72.05	63.89
TraesCS6B01G296200.1	Wheat	plastid	72.53	63.5
Os02t0700100-01	Rice	extracellular	71.57	63.33
TraesCS6A01G268900.1	Wheat	plastid	72.29	63.29
TraesCS6D01G246000.1	Wheat	plastid	72.29	63.16
KXG30937	Sorghum	nucleus	71.57	63.06
EES06634	Sorghum	nucleus	70.84	61.89
Zm00001d016034_P002	Maize	nucleus	69.88	61.57
Zm00001d000168_P001	Maize	plastid	70.6	61.43
Os04t0599800-01	Rice	nucleus	71.08	58.53
TraesCS2D01G438800.1	Wheat	nucleus	68.43	58.32
TraesCS2B01G461400.1	Wheat	nucleus	68.19	57.87
TraesCS2A01G440000.2	Wheat	nucleus	68.19	57.76
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	65.3	56.93
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	65.3	56.93
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	65.3	56.93
VIT_16s0039g02620.t01	Wine grape	cytosol	31.57	56.47
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	62.89	54.95
TraesCS6A01G085400.1	Wheat	nucleus	50.12	54.45
Os09t0242300-00	Rice	plastid	62.41	54.18
HORVU5Hr1G041780.3	Barley	plastid	65.78	50.46
KXG27036	Sorghum	cytosol	21.93	50.28
HORVU6Hr1G068080.3	Barley	plastid	63.61	49.53
Zm00001d017725_P001	Maize	mitochondrion	32.05	42.49
VIT_16s0013g00280.t01	Wine grape	nucleus	44.1	40.22
VIT_13s0019g01840.t01	Wine grape	plastid	42.89	37.79
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	40.72	37.39
Zm00001d005562_P001	Maize	plastid	16.87	33.82
TraesCS2D01G118700.1	Wheat	cytosol	13.49	26.67
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	7.71	21.92
Zm00001d006622_P001	Maize	golgi	13.98	17.16
TraesCS2D01G438900.1	Wheat	mitochondrion	0.48	0.49
TraesCS2B01G461500.1	Wheat	mitochondrion	0.48	0.49

Protein Annotations

EntrezGene:100256145	wikigene:100256145	MapMan:13.3.4.1.4	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	ProteinID:CBI36686
ProteinID:CBI36686.3	InterPro:Cdc20/Fizzy	UniProt:D7U1S0	EMBL:FN596500	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EntrezGene:LOC100256145	wikigene:LOC100256145	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0001BE48DD	ArrayExpress:VIT_05s0102g00680	EnsemblPlantsGene:VIT_05s0102g00680	EnsemblPlants:VIT_05s0102g00680.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

No Description!

Coordinates

chr5:-:22578399..22579963

Molecular Weight (calculated)

46200.8 Da

IEP (calculated)

8.595

GRAVY (calculated)

-0.405

Length

415 amino acids

Sequence
(BLAST)

001: MDFDFAHYML TERGKGKENQ SVRSQSKEAY LKLLAETFNM NRSRILAFKN KPPTPVKLIP DEFYSSVHQS KPSKPLRRIP QMQQTPVRTL DAPDIIDDFC
101: LNLMDWGSSN VLALALQNTV YLWDASNGSA SELVTVDDEN GSVTSVSWAA DGQYIAIGLN SSDVQLWDST ANRLLRTLRG GHQSRVGSLD WKNHILTTGG
201: MDGQIINNDV RAHSHIVATF RGHRQEVCGL KWSTSGQQLA SGGNDNLLHI WDRSMASMHS RSQWLHRLED HTAAVKALAW CPFQRNLLAS GGGGSDGCIK
301: FWNTHTGACL NSVDTGSQVC ALLWNKNERE LLSSHGFMQN QMTLWMYPSM VKIAELTGHT SRVLFMAQSP DGRIVATAAG DETLKFWNAF GTPEVKKAAP
401: KAEHPGPFPH LRRIR

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.