CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92655
EER95202
EES02737
EES04545
EES05908
EES05938
EES07517
KXG20781
KXG21309
KXG33895

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	EES02737	AT1G06590.1	20706207
AT4G33270.1	EER95202	AT1G78770.1	20706207
AT4G33270.1	KXG20781	AT2G04660.1	20706207
AT4G33270.1	KXG33895	AT2G20000.1	17944809
AT4G33270.1	KXG33895	AT2G20000.1	20706207
AT4G33270.1	KXG21309	AT2G39090.1	20706207
AT4G33270.1	EES04545	AT3G11830.1	20706207
AT4G33270.1	EES07517	AT3G48150.1	20706207
AT4G33270.1	EES05908	AT4G21530.1	20706207
AT4G33270.1	EER92655	AT5G26360.1	20706207
AT5G26900.1	KXG33895	AT2G20000.1	17944809
AT5G27080.1	EES04545	AT3G11830.1	20706207
AT5G27080.1	EES05938	AT3G20050.1	20706207
AT5G27080.1	EER92655	AT5G26360.1	20706207
AT5G27570.1	KXG33895	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06634	Sorghum	nucleus	94.69	93.89
Os02t0700100-01	Rice	extracellular	92.99	93.39
Zm00001d000168_P001	Maize	plastid	94.06	92.87
TraesCS5A01G272600.1	Wheat	plastid	90.02	90.79
TraesCS5D01G280600.1	Wheat	plastid	89.81	90.38
TraesCS5B01G272800.1	Wheat	plastid	89.38	89.96
TraesCS6B01G296200.1	Wheat	plastid	90.02	89.45
TraesCS6D01G246000.1	Wheat	plastid	90.02	89.26
TraesCS6A01G268900.1	Wheat	plastid	89.81	89.24
OQU82251	Sorghum	cytosol	31.0	83.43
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	78.13	77.47
VIT_15s0107g00320.t01	Wine grape	nucleus	71.97	75.33
PGSC0003DMT400069533	Potato	nucleus, plastid	72.61	75.16
Solyc06g072830.2.1	Tomato	nucleus, plastid	72.4	74.95
Solyc03g096870.2.1	Tomato	nucleus	71.76	74.61
PGSC0003DMT400001467	Potato	nucleus	71.55	74.39
AT4G33260.1	Thale cress	nucleus	69.43	73.15
VIT_05s0029g01120.t01	Wine grape	nucleus	63.27	72.16
VIT_05s0102g00550.t01	Wine grape	nucleus	63.06	71.91
VIT_05s0102g00640.t01	Wine grape	nucleus	63.06	71.91
AT4G33270.1	Thale cress	nucleus	69.64	71.77
VIT_05s0102g00680.t01	Wine grape	nucleus	63.06	71.57
Bra037011.1-P	Field mustard	nucleus	63.48	71.36
KXG27036	Sorghum	cytosol	27.18	70.72
VIT_16s0039g02510.t01	Wine grape	nucleus	66.24	69.18
Bra005544.1-P	Field mustard	nucleus	64.33	69.02
Bra034555.1-P	Field mustard	nucleus	54.99	68.34
AT5G27570.1	Thale cress	nucleus	64.12	67.11
AT5G27080.1	Thale cress	nucleus	62.42	66.52
AT5G26900.1	Thale cress	nucleus	62.42	66.22
PGSC0003DMT400047585	Potato	nucleus	62.42	65.62
Solyc08g005420.2.1	Tomato	nucleus	62.0	65.18
HORVU6Hr1G068080.3	Barley	plastid	72.61	64.17
Bra008327.1-P	Field mustard	cytosol, mitochondrion	55.63	61.22
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	51.59	56.78
KRH08491	Soybean	cytosol	15.5	52.14
VIT_16s0039g02620.t01	Wine grape	cytosol	25.48	51.72
Bra011430.1-P	Field mustard	cytosol	70.28	46.29
CDX98239	Canola	nucleus	12.95	45.52
EES02145	Sorghum	plastid	40.13	39.21
OQU93351	Sorghum	nucleus	40.13	27.16

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	UniProt:A0A194YRX0	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KXG30937	ProteinID:KXG30937	ProteinID:KXG30937.1	ProteinID:KXG30938.1
PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918
PANTHER:PTHR19918:SF30	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	EnsemblPlantsGene:SORBI_3004G270800	SUPFAM:SSF50998	UniParc:UPI0001C80C40
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:61488123..61497424

Molecular Weight (calculated)

51490.4 Da

IEP (calculated)

7.216

GRAVY (calculated)

-0.431

Length

471 amino acids

Sequence
(BLAST)

001: MDAGSHSISS EKSRAAAAPR PPLQEAVSRP YMPSLGSGCR NPSAKCYGDR FIPDRSAMDM DMAHFLLTEP RKDKENAAAS PSKEAYRRLL AEKLLNNRTR
101: ILAFRNKPPE PENVSFADAA SSNLQAKPAK QRRHIPQSAE RTLDAPELVD DYYLNLLDWG SNNVLSIALG DTLYLWDASS GSTSELVTID EDSGPITSVS
201: WAPDGRHIAV GLNSSDVQLW DTSSNRLLRT LRGVHEARVG SLAWNNSILT TGGMDGKIVN NDVRIRDHVV QTYEGHSQEV CGLKWSGSGQ QLASGGNDNL
301: LHIWDVSMAS SMPSAGRNQW LHRLEDHTAA VKALAWCPFQ SNLLATGGGG SDRCIKFWNT HTGACLNSVD TGSQVCALLW NKNERELLSS HGFTQNQLTL
401: WKYPSMVKMA ELTGHTSRVL FMAQSPDGCT VASAAADETL RFWNVFGAPE APKPAAKASH TGMFNSFNHI R

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.