Factsheet for HORVU5Hr1G074370.15

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
TargetP:	secretory
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G004870.2
HORVU0Hr1G004910.1
HORVU0Hr1G004980.2
HORVU0Hr1G027080.4
HORVU1Hr1G021230.8
HORVU1Hr1G052730.26
HORVU2Hr1G083840.8
HORVU4Hr1G064670.6
HORVU5Hr1G005770.3
HORVU6Hr1G025270.1
HORVU6Hr1G062870.1
HORVU7Hr1G044070.2
HORVU7Hr1G080310.1
HORVU7Hr1G093620.9

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	HORVU5Hr1G005770.3	AT1G06590.1	20706207
AT4G33270.1	HORVU4Hr1G064670.6	AT1G78770.1	20706207
AT4G33270.1	HORVU0Hr1G004870.2	AT2G04660.1	20706207
AT4G33270.1	HORVU0Hr1G004910.1	AT2G04660.1	20706207
AT4G33270.1	HORVU0Hr1G004980.2	AT2G04660.1	20706207
AT4G33270.1	HORVU2Hr1G083840.8	AT2G04660.1	20706207
AT4G33270.1	HORVU7Hr1G093620.9	AT2G20000.1	17944809
AT4G33270.1	HORVU7Hr1G093620.9	AT2G20000.1	20706207
AT4G33270.1	HORVU1Hr1G021230.8	AT2G39090.1	20706207
AT4G33270.1	HORVU6Hr1G025270.1	AT3G11830.1	20706207
AT4G33270.1	HORVU0Hr1G027080.4	AT3G48150.1	20706207
AT4G33270.1	HORVU6Hr1G062870.1	AT3G48150.1	20706207
AT4G33270.1	HORVU7Hr1G080310.1	AT5G26360.1	20706207
AT5G26900.1	HORVU7Hr1G093620.9	AT2G20000.1	17944809
AT5G27080.1	HORVU6Hr1G025270.1	AT3G11830.1	20706207
AT5G27080.1	HORVU1Hr1G052730.26	AT3G20050.1	20706207
AT5G27080.1	HORVU7Hr1G044070.2	AT3G20050.1	20706207
AT5G27080.1	HORVU7Hr1G080310.1	AT5G26360.1	20706207
AT5G27570.1	HORVU7Hr1G093620.9	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G280600.1	Wheat	plastid	84.21	85.47
TraesCS5A01G272600.1	Wheat	plastid	83.37	84.8
TraesCS5B01G272800.1	Wheat	plastid	83.37	84.62
Os02t0700100-01	Rice	extracellular	79.58	80.6
KXG30937	Sorghum	nucleus	77.47	78.13
Zm00001d000168_P001	Maize	plastid	77.68	77.36
Zm00001d016034_P002	Maize	nucleus	76.42	77.07
EES06634	Sorghum	nucleus	76.63	76.63
VIT_15s0107g00320.t01	Wine grape	nucleus	61.68	65.11
PGSC0003DMT400069533	Potato	nucleus, plastid	62.11	64.84
PGSC0003DMT400001467	Potato	nucleus	61.68	64.68
Solyc06g072830.2.1	Tomato	nucleus, plastid	61.68	64.4
Solyc03g096870.2.1	Tomato	nucleus	61.26	64.24
VIT_05s0102g00640.t01	Wine grape	nucleus	54.74	62.95
VIT_05s0102g00550.t01	Wine grape	nucleus	54.74	62.95
VIT_05s0029g01120.t01	Wine grape	nucleus	54.74	62.95
VIT_05s0102g00680.t01	Wine grape	nucleus	54.95	62.89
AT4G33260.1	Thale cress	nucleus	59.16	62.86
AT4G33270.1	Thale cress	nucleus	59.16	61.49
Bra037011.1-P	Field mustard	nucleus	53.47	60.62
VIT_16s0039g02510.t01	Wine grape	nucleus	57.47	60.53
Bra005544.1-P	Field mustard	nucleus	55.37	59.91
PGSC0003DMT400047585	Potato	nucleus	55.16	58.48
Solyc08g005420.2.1	Tomato	nucleus	54.74	58.04
AT5G27080.1	Thale cress	nucleus	53.89	57.92
Bra034555.1-P	Field mustard	nucleus	45.89	57.52
AT5G26900.1	Thale cress	nucleus	53.68	57.43
AT5G27570.1	Thale cress	nucleus	54.32	57.33
HORVU5Hr1G041780.3	Barley	plastid	63.58	55.82
HORVU6Hr1G068080.3	Barley	plastid	62.11	55.35
Bra008327.1-P	Field mustard	cytosol, mitochondrion	48.84	54.21
VIT_16s0039g02620.t01	Wine grape	cytosol	24.84	50.86
KRH08491	Soybean	cytosol	14.11	47.86
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	42.32	46.96
Zm00001d017725_P001	Maize	mitochondrion	28.63	43.45
CDX98239	Canola	nucleus	11.37	40.3
Bra011430.1-P	Field mustard	cytosol	60.0	39.86
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	33.47	28.24
HORVU3Hr1G115170.1	Barley	cytosol, mitochondrion, nucleus, plastid	34.74	28.11
GSMUA_Achr2P19120_001	Banana	cytosol	14.95	26.59

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	UniProt:A0A287RTA1	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:HORVU5Hr1G074370
EnsemblPlants:HORVU5Hr1G074370.15	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000B46D0DD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:543166777..543168496

Molecular Weight (calculated)

52532.2 Da

IEP (calculated)

7.911

GRAVY (calculated)

-0.353

Length

475 amino acids

Sequence
(BLAST)

001: RILLALARSP SLLANPLVVQ LQHPVLVLFF CSIDPSIRVY SCRDYCYLFA CSVSSVLTMD AGSRSISSGK NRAGAVQRPP LQEAGSRPYM PSLSTRNPSA
101: KCYGDRFIPD RSAMDMDVAH YLLTEGKKDK ENAAASPSKE AYRRLLAEKL LNNRTRILAF RNKPPEPEKV FAADTVSSHQ AKPSKQRRYI PQSAERTLDA
201: PDLVDDYYLN LMDWGSRDVL SIALGDTMYL WDASSGSTSE LMTVEEDNGP ITSVSWAPDG QHLAIGLNSS DIQLWDTSSN RLLRTLKGVH ESRVGSLAWN
301: DNILTTGCMD GRIVNNDVRI RDHAVQTYQG HSQEVCGLKW SGSGQQLASG GNDNLLHIWD ASMASSMPSP GRNQWLHRLE DHMAAVKALA WCPFQSNLLA
401: TGGGASDRCI KFWNTHTGAC LNSVDTGSQV CSLLWNKNER ELLSSHGFTH NQLTLWKYPS MVKMAELSGH TSRVL

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.