Factsheet for HORVU6Hr1G068080.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
TargetP:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G004870.2
HORVU0Hr1G004910.1
HORVU0Hr1G004980.2
HORVU0Hr1G027080.4
HORVU1Hr1G021230.8
HORVU1Hr1G052730.26
HORVU2Hr1G083840.8
HORVU4Hr1G064670.6
HORVU5Hr1G005770.3
HORVU6Hr1G025270.1
HORVU6Hr1G062870.1
HORVU7Hr1G044070.2
HORVU7Hr1G080310.1
HORVU7Hr1G093620.9

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	HORVU5Hr1G005770.3	AT1G06590.1	20706207
AT4G33270.1	HORVU4Hr1G064670.6	AT1G78770.1	20706207
AT4G33270.1	HORVU0Hr1G004870.2	AT2G04660.1	20706207
AT4G33270.1	HORVU0Hr1G004910.1	AT2G04660.1	20706207
AT4G33270.1	HORVU0Hr1G004980.2	AT2G04660.1	20706207
AT4G33270.1	HORVU2Hr1G083840.8	AT2G04660.1	20706207
AT4G33270.1	HORVU7Hr1G093620.9	AT2G20000.1	17944809
AT4G33270.1	HORVU7Hr1G093620.9	AT2G20000.1	20706207
AT4G33270.1	HORVU1Hr1G021230.8	AT2G39090.1	20706207
AT4G33270.1	HORVU6Hr1G025270.1	AT3G11830.1	20706207
AT4G33270.1	HORVU0Hr1G027080.4	AT3G48150.1	20706207
AT4G33270.1	HORVU6Hr1G062870.1	AT3G48150.1	20706207
AT4G33270.1	HORVU7Hr1G080310.1	AT5G26360.1	20706207
AT5G26900.1	HORVU7Hr1G093620.9	AT2G20000.1	17944809
AT5G27080.1	HORVU6Hr1G025270.1	AT3G11830.1	20706207
AT5G27080.1	HORVU1Hr1G052730.26	AT3G20050.1	20706207
AT5G27080.1	HORVU7Hr1G044070.2	AT3G20050.1	20706207
AT5G27080.1	HORVU7Hr1G080310.1	AT5G26360.1	20706207
AT5G27570.1	HORVU7Hr1G093620.9	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G246000.1	Wheat	plastid	67.35	75.58
TraesCS6A01G268900.1	Wheat	plastid	67.17	75.53
TraesCS6B01G296200.1	Wheat	plastid	66.98	75.32
KXG30937	Sorghum	nucleus	64.17	72.61
Os02t0700100-01	Rice	extracellular	63.79	72.49
Zm00001d000168_P001	Maize	plastid	63.6	71.07
EES06634	Sorghum	nucleus	63.23	70.95
Zm00001d016034_P002	Maize	nucleus	61.91	70.06
VIT_15s0107g00320.t01	Wine grape	nucleus	55.72	66.0
Solyc03g096870.2.1	Tomato	nucleus	55.35	65.12
PGSC0003DMT400001467	Potato	nucleus	55.16	64.9
VIT_05s0029g01120.t01	Wine grape	nucleus	49.91	64.41
PGSC0003DMT400069533	Potato	nucleus, plastid	54.97	64.4
Solyc06g072830.2.1	Tomato	nucleus, plastid	54.78	64.18
VIT_05s0102g00640.t01	Wine grape	nucleus	49.53	63.92
VIT_05s0102g00550.t01	Wine grape	nucleus	49.53	63.92
VIT_05s0102g00680.t01	Wine grape	nucleus	49.53	63.61
AT4G33260.1	Thale cress	nucleus	52.53	62.64
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	55.35	62.11
Bra034555.1-P	Field mustard	nucleus	44.09	62.01
AT4G33270.1	Thale cress	nucleus	52.91	61.71
Bra037011.1-P	Field mustard	nucleus	46.9	59.67
VIT_16s0039g02510.t01	Wine grape	nucleus	49.91	58.98
AT5G27570.1	Thale cress	nucleus	49.16	58.22
Bra005544.1-P	Field mustard	nucleus	47.84	58.09
AT5G27080.1	Thale cress	nucleus	48.03	57.92
AT5G26900.1	Thale cress	nucleus	47.28	56.76
PGSC0003DMT400047585	Potato	nucleus	46.15	54.91
Bra008327.1-P	Field mustard	cytosol, mitochondrion	43.9	54.67
Solyc08g005420.2.1	Tomato	nucleus	45.78	54.46
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	42.96	53.5
HORVU5Hr1G041780.3	Barley	plastid	52.35	51.57
Zm00001d017725_P001	Maize	mitochondrion	26.83	45.69
CDX98239	Canola	nucleus	10.88	43.28
Bra011430.1-P	Field mustard	cytosol	53.28	39.72
VIT_16s0039g02620.t01	Wine grape	cytosol	15.2	34.91
KRH08491	Soybean	cytosol	8.82	33.57
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	32.08	30.37
HORVU3Hr1G115170.1	Barley	cytosol, mitochondrion, nucleus, plastid	32.27	29.3
GSMUA_Achr2P19120_001	Banana	cytosol	14.63	29.21

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	UniProt:A0A287UIV9	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010997	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0030234
GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:HORVU6Hr1G068080	EnsemblPlants:HORVU6Hr1G068080.3	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	TMHMM:TMhelix
UniParc:UPI000B48917E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg

Description

No Description!

Coordinates

chrchr6H:+:471976509..471978787

Molecular Weight (calculated)

57321.5 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.313

Length

533 amino acids

Sequence
(BLAST)

001: QSVAFSSLPP PPLVLAAAAS RSSSRKIPVS RRRADLIVLP VAIFCCLFVC LFLVSSNHGR RLPLDLLQQE QRRRRAAPAA PGGRLPPLHA TAQHHLAQPV
101: GQVLRRQVHP GPVSDGHGHG ALPAHGDQEG QGERGGHRGV PVQGGLPEAS RGEAAQQPDA DPRLQEQAAG AGERVCCRHG FFSPTGQAGQ AQALHSPGSA
201: ERTLDAPDLV DDYYLNLMDW GSSNVLSIAL SDTMYLWDAS SGSTSELVTV EEDNGPITSV SWAPDGRHLA IGLNSSDIQL WDTSSNRLLR TLKGVHESRV
301: GSLAWNNNVL TTGGMDGRIV NNDVRIRDHA VQMYQGHSQE VCGLKWSGSG QQLASGGNDN LLHIWDVSMA SSMPSAGRNQ WLHRLEDHTA AVKALAWCPF
401: QSNLLATGGG GSDRCIKFWN THTGACLNSV DTGSQVCSLL WNKNERELLS SHGFTQNQLT LWKYPSMVKM AELTGHTSRV LFMAQSPDGC TVASAAADET
501: LRFWNVFGTP EVAKPAPKAS HSGMFSSSFA HIR

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.