Factsheet for Zm00001d000168_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014685_P009
Zm00001d017475_P002
Zm00001d018349_P001
Zm00001d021235_P001
Zm00001d024858_P004
Zm00001d028183_P002
Zm00001d028358_P003
Zm00001d035596_P001
Zm00001d038666_P002
Zm00001d040015_P001
Zm00001d042523_P001
Zm00001d045047_P002
Zm00001d047979_P005
Zm00001d052056_P005
Zm00001d052072_P003
Zm00001d052917_P001
Zm00001d053553_P002
Zm00001d053857_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	Zm00001d021235_P001	AT1G06590.1	20706207
AT4G33270.1	Zm00001d028358_P003	AT1G78770.1	20706207
AT4G33270.1	Zm00001d047979_P005	AT1G78770.1	20706207
AT4G33270.1	Zm00001d014685_P009	AT2G04660.1	20706207
AT4G33270.1	Zm00001d042523_P001	AT2G20000.1	17944809
AT4G33270.1	Zm00001d042523_P001	AT2G20000.1	20706207
AT4G33270.1	Zm00001d024858_P004	AT2G39090.1	20706207
AT4G33270.1	Zm00001d053857_P002	AT3G11830.1	20706207
AT4G33270.1	Zm00001d017475_P002	AT3G48150.1	20706207
AT4G33270.1	Zm00001d035596_P001	AT4G21530.1	20706207
AT4G33270.1	Zm00001d038666_P002	AT4G21530.1	20706207
AT4G33270.1	Zm00001d040015_P001	AT4G21530.1	20706207
AT4G33270.1	Zm00001d045047_P002	AT4G21530.1	20706207
AT4G33270.1	Zm00001d052072_P003	AT4G21530.1	20706207
AT4G33270.1	Zm00001d052917_P001	AT4G21530.1	20706207
AT4G33270.1	Zm00001d028183_P002	AT5G26360.1	20706207
AT4G33270.1	Zm00001d053553_P002	AT5G26360.1	20706207
AT5G26900.1	Zm00001d042523_P001	AT2G20000.1	17944809
AT5G27080.1	Zm00001d053857_P002	AT3G11830.1	20706207
AT5G27080.1	Zm00001d018349_P001	AT3G20050.1	20706207
AT5G27080.1	Zm00001d052056_P005	AT3G20050.1	20706207
AT5G27080.1	Zm00001d028183_P002	AT5G26360.1	20706207
AT5G27080.1	Zm00001d053553_P002	AT5G26360.1	20706207
AT5G27570.1	Zm00001d042523_P001	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30937	Sorghum	nucleus	92.87	94.06
Os02t0700100-01	Rice	extracellular	89.31	90.83
TraesCS5D01G280600.1	Wheat	plastid	88.26	89.96
TraesCS5A01G272600.1	Wheat	plastid	88.05	89.94
Zm00001d016034_P002	Maize	nucleus	88.68	89.81
TraesCS5B01G272800.1	Wheat	plastid	87.84	89.53
TraesCS6B01G296200.1	Wheat	plastid	88.05	88.61
TraesCS6A01G268900.1	Wheat	plastid	87.84	88.4
TraesCS6D01G246000.1	Wheat	plastid	87.84	88.21
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	77.36	77.68
VIT_15s0107g00320.t01	Wine grape	nucleus	70.23	74.44
PGSC0003DMT400069533	Potato	nucleus, plastid	70.86	74.29
Solyc06g072830.2.1	Tomato	nucleus, plastid	70.44	73.85
Solyc03g096870.2.1	Tomato	nucleus	68.97	72.63
PGSC0003DMT400001467	Potato	nucleus	68.97	72.63
AT4G33260.1	Thale cress	nucleus	66.67	71.14
VIT_05s0029g01120.t01	Wine grape	nucleus	61.43	70.94
VIT_05s0102g00550.t01	Wine grape	nucleus	61.43	70.94
VIT_05s0102g00640.t01	Wine grape	nucleus	61.43	70.94
VIT_05s0102g00680.t01	Wine grape	nucleus	61.43	70.6
AT4G33270.1	Thale cress	nucleus	66.88	69.8
Bra037011.1-P	Field mustard	nucleus	61.22	69.69
VIT_16s0039g02510.t01	Wine grape	nucleus	64.57	68.29
Bra034555.1-P	Field mustard	nucleus	53.67	67.55
Bra005544.1-P	Field mustard	nucleus	61.64	66.97
AT5G27570.1	Thale cress	nucleus	62.26	66.0
AT5G27080.1	Thale cress	nucleus	60.59	65.38
AT5G26900.1	Thale cress	nucleus	60.59	65.09
PGSC0003DMT400047585	Potato	nucleus	61.01	64.96
Solyc08g005420.2.1	Tomato	nucleus	60.59	64.51
HORVU6Hr1G068080.3	Barley	plastid	71.07	63.6
Bra008327.1-P	Field mustard	cytosol, mitochondrion	55.14	61.45
Zm00001d017725_P001	Maize	mitochondrion	38.36	58.47
Zm00001d005562_P001	Maize	plastid	24.32	56.04
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	50.1	55.84
Zm00001d015555_P001	Maize	cytosol	8.6	53.95
VIT_16s0039g02620.t01	Wine grape	cytosol	24.95	51.29
KRH08491	Soybean	cytosol	14.88	50.71
Bra011430.1-P	Field mustard	cytosol	68.13	45.45
CDX98239	Canola	nucleus	12.37	44.03
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	12.79	41.78
Zm00001d041957_P004	Maize	plastid	40.04	39.38
Zm00001d048472_P001	Maize	nucleus, plastid	39.83	36.54
Zm00001d027430_P001	Maize	plastid	39.2	36.38
GSMUA_Achr2P19120_001	Banana	cytosol	16.77	29.96
Zm00001d006622_P001	Maize	golgi	18.45	26.04

Protein Annotations

EntrezGene:100285215	MapMan:13.3.4.1.4	Gene3D:2.130.10.10	UniProt:A0A1X7YFP2	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SUPFAM:SSF50998	UniParc:UPI000221331A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
EnsemblPlantsGene:Zm00001d000168	EnsemblPlants:Zm00001d000168_P001	EnsemblPlants:Zm00001d000168_T001	SEG:seg	:	:

Description

cell division cycle201 cell division cycle201

Coordinates

chrB73V4_ctg50:+:189024..191498

Molecular Weight (calculated)

52158.3 Da

IEP (calculated)

8.229

GRAVY (calculated)

-0.448

Length

477 amino acids

Sequence
(BLAST)

001: MDAGSRSISS AKNRAAAVAA APRPPLQEAG SRPYMPSLSS GPRNPSAKCY GDRFIPDRSA MDMDLAHYLL TEPRRDKENA SGMAASPSKE AYRRLLAEKL
101: LNNRTRILAF RSKPPEPENV SFADTTSSNL QAKPAKQRRH IPQSAERTLD APELVDDYYL NLLDWGSNNV LSIALGDTVY LWDASSGSTS ELVTVGEDSG
201: PVTSVSWAPD GRHMAVGLNS SDVQLWDTSS NRLLRTLRGA HEARVGSLAW NNSVLTTGCM DGKIVNNDVR IRDHVVQRYE GHSQEVCGLK WSGSGQQLAS
301: GGNDNLLHIW DVSMASSMPS AGRNQWLHRL EDHMAAVKAL AWCPFQSNLL ATGGGGSDRC IKFWNTHTGV CLNSVDTGSQ VCALLWNKNE RELLSSHGFT
401: QNQLTLWKYP SMVKMAELNG HTSRVLFMAQ SPDGCTVASA AADETLRFWN VFGTPETPKP AAKASHTGMF NSFKHIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.