Factsheet for Solyc08g005420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g067490.2.1
Solyc01g090750.2.1
Solyc02g079050.2.1
Solyc03g061590.2.1
Solyc03g113740.2.1
Solyc05g007750.2.1
Solyc05g056310.2.1
Solyc06g065520.2.1
Solyc07g054690.1.1
Solyc08g067190.2.1
Solyc10g080400.1.1
Solyc12g014320.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	Solyc08g067190.2.1	AT1G06590.1	20706207
AT4G33270.1	Solyc12g014320.1.1	AT1G78770.1	20706207
AT4G33270.1	Solyc05g007750.2.1	AT2G04660.1	20706207
AT4G33270.1	Solyc03g061590.2.1	AT2G20000.1	17944809
AT4G33270.1	Solyc03g061590.2.1	AT2G20000.1	20706207
AT4G33270.1	Solyc01g067490.2.1	AT2G39090.1	20706207
AT4G33270.1	Solyc10g080400.1.1	AT2G42260.1	20706207
AT4G33270.1	Solyc06g065520.2.1	AT3G11830.1	20706207
AT4G33270.1	Solyc03g113740.2.1	AT3G48150.1	20706207
AT4G33270.1	Solyc10g080400.1.1	AT3G57860.1	20706207
AT4G33270.1	Solyc02g079050.2.1	AT4G21530.1	20706207
AT4G33270.1	Solyc07g054690.1.1	AT4G28230.1	20706207
AT4G33270.1	Solyc05g056310.2.1	AT5G26360.1	20706207
AT5G26900.1	Solyc03g061590.2.1	AT2G20000.1	17944809
AT5G27080.1	Solyc06g065520.2.1	AT3G11830.1	20706207
AT5G27080.1	Solyc01g090750.2.1	AT3G20050.1	20706207
AT5G27080.1	Solyc05g056310.2.1	AT5G26360.1	20706207
AT5G27570.1	Solyc03g061590.2.1	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047585	Potato	nucleus	95.09	95.09
Solyc03g096870.2.1	Tomato	nucleus	71.21	70.42
CDY13491	Canola	cytosol	56.7	69.02
Solyc06g072830.2.1	Tomato	nucleus, plastid	69.87	68.79
AT4G33260.1	Thale cress	nucleus	68.3	68.46
CDY59111	Canola	nucleus	32.81	68.06
Bra037011.1-P	Field mustard	nucleus	63.39	67.78
AT4G33270.1	Thale cress	nucleus	68.53	67.18
CDY26774	Canola	mitochondrion	16.29	66.36
OQU82251	Sorghum	cytosol	25.89	66.29
KRH68047	Soybean	nucleus	66.74	65.43
KRH44738	Soybean	nucleus	64.51	65.38
CDX68960	Canola	nucleus	59.38	64.41
TraesCS5B01G272800.1	Wheat	plastid	66.07	63.25
TraesCS5D01G280600.1	Wheat	plastid	65.85	63.03
TraesCS5A01G272600.1	Wheat	plastid	65.4	62.74
AT5G27080.1	Thale cress	nucleus	61.83	62.67
Bra005544.1-P	Field mustard	nucleus	61.38	62.64
TraesCS6A01G268900.1	Wheat	plastid	66.07	62.45
AT5G27570.1	Thale cress	nucleus	62.72	62.44
CDY59109	Canola	nucleus	58.26	62.29
CDY59110	Canola	nucleus	58.26	62.29
CDY52543	Canola	nucleus	59.38	62.15
Os02t0700100-01	Rice	extracellular	64.96	62.05
TraesCS6B01G296200.1	Wheat	plastid	65.62	62.03
KXG30937	Sorghum	nucleus	65.18	62.0
TraesCS6D01G246000.1	Wheat	plastid	65.62	61.89
Zm00001d016034_P002	Maize	nucleus	64.96	61.78
Bra034555.1-P	Field mustard	nucleus	52.23	61.74
AT5G26900.1	Thale cress	nucleus	60.94	61.49
EES06634	Sorghum	nucleus	64.51	60.84
Zm00001d000168_P001	Maize	plastid	64.51	60.59
KRG94456	Soybean	cytosol	31.7	60.43
Bra008327.1-P	Field mustard	cytosol, mitochondrion	57.37	60.05
TraesCS2D01G438800.1	Wheat	nucleus	64.29	59.14
TraesCS2B01G461400.1	Wheat	nucleus	64.51	59.1
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	25.22	58.55
TraesCS2A01G440000.2	Wheat	nucleus	63.17	57.76
Os04t0599800-01	Rice	nucleus	64.51	57.34
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	60.27	56.72
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	60.04	56.51
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	60.04	56.51
Os09t0242300-00	Rice	plastid	59.6	55.86
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	58.04	54.74
KXG27036	Sorghum	cytosol	22.1	54.7
TraesCS6A01G085400.1	Wheat	nucleus	46.43	54.45
CDY71694	Canola	nucleus	20.31	52.6
KRH07005	Soybean	nucleus	14.51	52.42
GSMUA_Achr1P27660_001	Banana	mitochondrion	18.53	51.55
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	48.21	50.47
GSMUA_AchrUn_...	Banana	cytosol	26.79	50.21
HORVU5Hr1G041780.3	Barley	plastid	59.82	49.54
CDY44519	Canola	cytosol, nucleus	56.47	48.75
GSMUA_AchrUn_...	Banana	cytosol	9.38	48.28
GSMUA_Achr3P21370_001	Banana	cytosol	42.41	47.86
GSMUA_Achr1P25940_001	Banana	cytosol	31.7	47.81
GSMUA_Achr1P27670_001	Banana	cytosol	6.7	47.62
GSMUA_AchrUn_...	Banana	nucleus	43.08	46.96
GSMUA_AchrUn_...	Banana	cytosol	37.5	46.15
HORVU6Hr1G068080.3	Barley	plastid	54.46	45.78
GSMUA_Achr1P28050_001	Banana	cytosol	41.52	45.7
CDY28290	Canola	cytosol, mitochondrion, nucleus	14.73	45.21
Zm00001d017725_P001	Maize	mitochondrion	29.91	42.81
GSMUA_AchrUn_...	Banana	cytosol	29.02	42.62
Bra011430.1-P	Field mustard	cytosol	67.86	42.52
Solyc03g095210.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	41.96	40.87
Zm00001d005562_P001	Maize	plastid	18.53	40.1
CDY46124	Canola	cytosol	53.35	38.55
Solyc08g080080.2.1	Tomato	nucleus, plastid	39.51	36.8
Solyc12g056490.1.1	Tomato	nucleus, plastid	39.06	36.38
GSMUA_AchrUn_...	Banana	cytosol	22.99	36.01
Solyc06g043150.2.1	Tomato	nucleus, plastid	38.17	34.27
TraesCS2D01G118700.1	Wheat	cytosol	14.73	31.43
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	8.71	26.71
Zm00001d006622_P001	Maize	golgi	15.4	20.41
TraesCS2D01G438900.1	Wheat	mitochondrion	1.12	1.23
TraesCS2B01G461500.1	Wheat	mitochondrion	1.12	1.22

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0051301	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CI33	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc08g005420.2	EnsemblPlants:Solyc08g005420.2.1	UniParc:UPI0001C23698	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

No Description!

Coordinates

chr8:+:313072..316046

Molecular Weight (calculated)

50069.2 Da

IEP (calculated)

9.409

GRAVY (calculated)

-0.456

Length

448 amino acids

Sequence
(BLAST)

001: MDAGSRYNKF RPPLVNQMSH KKRTRENLDR FIPNRSAMDF DYAHYMLSGG KVKKEHYGVN SPSKEAYSKQ LAEIFNMNRT RILAFKNKPP HSAERVSESP
101: SSIQQPKTVK KRRYIPQSSE RTLDAPDILD DFYLNLLDWG SNNVIAIALG NSVYLWDASD GSVTELLTVD DDFGPVTAVS WSPDGRSLAV GLNNSHVQLW
201: NTLQGSSRLL RTLQGHRLRV GSLDWNGHIL TTGGMDGMII NNDVRIRSHI VGTYRGHNQE ICGLKWSASG QQLASGGNDN LVHIWSISMG SANSTHQWVH
301: RMTDHTSAVK ALSWCPFQSN MVASGGGIGD QCIKFWNTNT GACLNSVNTG SQVCSLLWNR HDRELLSSHG FIDNQLAVWK YPSMTKISEL LGHTSRVLHM
401: AQSPDGYTVA TAAADETLRL WNVFGNPTET KPVLKRKLEP FFDLAQIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.