Factsheet for Solyc06g043150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005250.2.1
Solyc01g067490.2.1
Solyc01g090750.2.1
Solyc01g107740.2.1
Solyc02g079050.2.1
Solyc03g061590.2.1
Solyc03g113740.2.1
Solyc04g045340.2.1
Solyc04g082430.2.1	endoplasmic reticulum
Solyc05g007750.2.1
Solyc05g056310.2.1
Solyc08g067030.2.1
Solyc08g067190.2.1
Solyc10g050060.1.1
Solyc10g080400.1.1
Solyc10g086400.1.1
Solyc11g073280.1.1
Solyc12g014320.1.1
Solyc12g094600.1.1	endoplasmic reticulum

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13840.1	Solyc08g067190.2.1	AT1G06590.1	20706207
AT5G13840.1	Solyc01g005250.2.1	AT1G14810.1	20706207
AT5G13840.1	Solyc04g082430.2.1	AT1G20610.1	20407024
AT5G13840.1	Solyc12g094600.1.1	AT1G20610.1	20407024
AT5G13840.1	Solyc04g045340.2.1	AT1G23190.1	20706207
AT5G13840.1	Solyc12g014320.1.1	AT1G78770.1	20706207
AT5G13840.1	Solyc05g007750.2.1	AT2G04660.1	20706207
AT5G13840.1	Solyc03g061590.2.1	AT2G20000.1	17944809
AT5G13840.1	Solyc03g061590.2.1	AT2G20000.1	20706207
AT5G13840.1	Solyc01g067490.2.1	AT2G39090.1	20706207
AT5G13840.1	Solyc10g080400.1.1	AT2G42260.1	20706207
AT5G13840.1	Solyc01g090750.2.1	AT3G20050.1	20706207
AT5G13840.1	Solyc03g113740.2.1	AT3G48150.1	20706207
AT5G13840.1	Solyc10g080400.1.1	AT3G57860.1	20706207
AT5G13840.1	Solyc02g079050.2.1	AT4G21530.1	20706207
AT5G13840.1	Solyc01g107740.2.1	AT4G34150.1	20706207
AT5G13840.1	Solyc10g050060.1.1	AT4G34150.1	20706207
AT5G13840.1	Solyc10g086400.1.1	AT5G02530.1	20706207
AT5G13840.1	Solyc11g073280.1.1	AT5G02530.1	20706207
AT5G13840.1	Solyc08g067030.2.1	AT5G25460.1	20706207
AT5G13840.1	Solyc05g056310.2.1	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076326	Potato	nucleus, plastid	98.2	97.61
VIT_13s0019g01840.t01	Wine grape	plastid	81.36	86.2
AT5G13840.1	Thale cress	plastid	78.36	81.29
CDX70523	Canola	plastid	75.75	80.77
CDX78541	Canola	plastid	75.55	80.56
Bra006219.1-P	Field mustard	plastid	77.35	79.42
KRG97899	Soybean	plastid	77.56	79.14
KRH30985	Soybean	plastid	78.16	78.0
GSMUA_Achr5P07090_001	Banana	plastid	70.74	77.75
Os01t0972900-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	68.14	71.13
EES02145	Sorghum	plastid	67.94	70.33
Zm00001d041957_P004	Maize	plastid	67.33	69.28
TraesCS3D01G533000.1	Wheat	plastid	66.73	68.94
TraesCS3B01G595600.1	Wheat	plastid	66.93	68.87
TraesCS3A01G527600.1	Wheat	plastid	66.53	68.17
Solyc08g080080.2.1	Tomato	nucleus, plastid	55.91	58.0
Solyc12g056490.1.1	Tomato	nucleus, plastid	54.91	56.96
HORVU3Hr1G115170.1	Barley	cytosol, mitochondrion, nucleus, plastid	66.73	56.73
Solyc03g096870.2.1	Tomato	nucleus	37.88	41.72
Solyc06g072830.2.1	Tomato	nucleus, plastid	37.88	41.54
Solyc08g005420.2.1	Tomato	nucleus	34.27	38.17
Solyc03g095210.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	30.86	33.48
Os01t0973000-01	Rice	cytosol	0.4	0.71

Protein Annotations

MapMan:13.3.4.1.3	Gene3D:2.130.10.10	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538
GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:K4C568	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918
PANTHER:PTHR19918:SF31	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc06g043150.2	EnsemblPlants:Solyc06g043150.2.1	UniParc:UPI0001C23696
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr6:+:29685566..29688014

Molecular Weight (calculated)

54351.2 Da

IEP (calculated)

9.972

GRAVY (calculated)

-0.420

Length

499 amino acids

Sequence
(BLAST)

001: MEPITQRRKS GINLPSTMSE TSLRLDAFSS PPRSKRTTNL ASSPMSNRSP RTISNLSSSP SSKSASCSDR FIPCRSSSRL HTFGLVEKAS PVKEGGGGNN
101: DAYSRLLKSE LFGADFSCFS SPAGTKGCAN SPMSPSKNML RFKTENSGPN SPSVLGHTDT SLSNEVSTPP KPPRKVPKTP HKVLDAPSLQ DDFYLNLVDW
201: SSQNILAVGL GTCVYLWTAS NSRVTKLCDL GPTDSVCSVQ WTREGSYISI GTSLGQVQVW DGTQCKKVRT FGGHQTRTGV LAWSSRILSS GSRDRNILQH
301: DVRVPSDFVS KFIGHKSEVC GLKWSHDDRE LASGGNDNQL LVWNQRSQQS VLKLTEHTAA VKAITWSPHQ CGLLASGGGT ADRCIRFWNT INGNQLNHID
401: TGSQVCNLAW SKNVNEIVST HGYSQNQIMV WKYPSMSKVA TLTGHSLRVL YLAMSPDGQT IVTGAGDETL RFWNVFPSVK IPAAVKDTGV WSLGRTHIR

Best Arabidopsis Sequence Match ( AT5G13840.1 )
(BLAST)

001: MASPQSTKTG LNLPAGMNQT SLRLETFSSS FRGISSLSSP SKSTCSDRFI PCRSSSRLHA FDLQDKEPTT PVKEGGNEAY SRLLKSELFG SDFASPLLSP
101: AGGQGSASSP MSPCTNMLRF KTDRSNSSPS SPFSPSILGN DNGHSSDSSP PPKPPRKVPK TPHKVLDAPS LQDDFYLNVV DWSSQNVLAV GLGTCVYLWT
201: ASNSKVTKLC DLGPNDSVCS VQWTREGSYI SIGTSHGQVQ VWDGTQCKRV RTMGGHQTRT GVLAWNSRIL SSGSRDRNIL QHDIRVQSDF VSKLVGHKSE
301: VCGLKWSHDD RELASGGNDN QLLVWNNHSQ QPILKLTEHT AAVKAITWSP HQSSLLASGG GTADRCIRFW NTTNGNQLNS IDTGSQVCNL AWSKNVNEIV
401: STHGYSQNQI MLWKYPSMSK VATLTGHSMR VLYLATSPDG QTIVTGAGDE TLRFWNVFPS VKMQTPVKDT GLWSLGRTQI R

Arabidopsis Description

FZR3Protein FIZZY-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.