Factsheet for Solyc10g050060.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015906	Potato	cytosol	92.0	92.0
PGSC0003DMT400077661	Potato	cytosol	69.6	85.29
Solyc01g107740.2.1	Tomato	cytosol	65.2	68.49
VIT_03s0180g00030.t01	Wine grape	cytosol	63.2	63.97
Os06t0638900-01	Rice	cytosol, plasma membrane	25.2	60.58
Bra034611.1-P	Field mustard	cytosol	52.0	53.94
CDX76264	Canola	cytosol	51.6	53.53
KRH77964	Soybean	cytosol	55.6	53.46
AT4G34150.1	Thale cress	cytosol	52.0	52.63
CDY57743	Canola	cytosol	49.6	51.88
CDX72452	Canola	cytosol	52.0	51.59
CDX75404	Canola	cytosol, extracellular, nucleus	53.2	51.55
KRH27566	Soybean	cytosol	53.2	51.55
GSMUA_Achr4P09410_001	Banana	cytosol	50.0	51.23
Bra011500.1-P	Field mustard	cytosol	52.8	51.16
CDY49277	Canola	cytosol	52.8	50.19
Bra017628.1-P	Field mustard	cytosol	51.6	49.24
GSMUA_Achr3P19730_001	Banana	mitochondrion	52.8	47.65
CDY31792	Canola	cytosol	12.0	46.15
OQU76760	Sorghum	cytosol	47.2	42.45
TraesCSU01G173200.1	Wheat	cytosol	43.6	41.92
TraesCS7B01G441800.1	Wheat	cytosol	45.6	41.91
TraesCS7B01G441900.1	Wheat	cytosol	45.6	41.91
TraesCS7A01G524400.1	Wheat	cytosol	45.2	41.54
TraesCS7D01G513300.1	Wheat	cytosol	43.6	40.07
Zm00001d046625_P001	Maize	cytosol	47.2	39.86
HORVU7Hr1G116460.1	Barley	cytosol	43.6	39.07
HORVU7Hr1G116400.2	Barley	cytosol	43.6	39.07
TraesCSU01G173100.1	Wheat	cytosol	44.0	39.01
CDY31791	Canola	extracellular, plasma membrane	8.8	27.16

Protein Annotations

EnsemblPlants:Solyc10g050060.1.1	EnsemblPlantsGene:Solyc10g050060.1	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PFscan:PS50004	SEG:seg
SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI000276A22A	UniProt:K4D0G2	MapMan:35.2	:

Description

No Description!

Coordinates

chr10:-:47684241..47686246

Molecular Weight (calculated)

27330.9 Da

IEP (calculated)

8.867

GRAVY (calculated)

-0.544

Length

250 amino acids

Sequence
(BLAST)

001: MSIAYGIQGQ LLEVTVVACN KLKDTEWISR QDPYVCLEYG SSKFRTRTCT DGGKNPTFQE KFVFKLIEGL REINVVVWNS NTVNSDDFIG SGKVQLQKVL
101: SQGFDDTAWP LQRKNGRHAG EVRLIMHYAN TNKPATSHAQ SGPPFVTPTP GSYPYSVAPP HVASHPTPSG YPAPSPYSTA SPPSAFYPAS PYSTVPPPPA
201: AYHSTSLYPP QSAAYPSPYS SSAYLPQPYP PQGYSYPPGQ YPGVYPPRSY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.