Factsheet for PGSC0003DMT400015906

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g050060.1.1	Tomato	cytosol	92.0	92.0
PGSC0003DMT400077661	Potato	cytosol	72.0	88.24
PGSC0003DMT400066559	Potato	cytosol	66.0	70.21
VIT_03s0180g00030.t01	Wine grape	cytosol	64.4	65.18
Os06t0638900-01	Rice	cytosol, plasma membrane	25.2	60.58
Bra034611.1-P	Field mustard	cytosol	52.8	54.77
CDX76264	Canola	cytosol	52.4	54.36
CDY57743	Canola	cytosol	51.6	53.97
KRH77964	Soybean	cytosol	56.0	53.85
AT4G34150.1	Thale cress	cytosol	52.8	53.44
CDX72452	Canola	cytosol	53.6	53.17
Bra011500.1-P	Field mustard	cytosol	54.4	52.71
CDX75404	Canola	cytosol, extracellular, nucleus	54.4	52.71
KRH27566	Soybean	cytosol	54.0	52.33
CDY49277	Canola	cytosol	54.4	51.71
GSMUA_Achr4P09410_001	Banana	cytosol	50.0	51.23
Bra017628.1-P	Field mustard	cytosol	53.6	51.15
CDY31792	Canola	cytosol	12.4	47.69
GSMUA_Achr3P19730_001	Banana	mitochondrion	52.8	47.65
OQU76760	Sorghum	cytosol	47.6	42.81
TraesCS7B01G441800.1	Wheat	cytosol	45.6	41.91
TraesCS7B01G441900.1	Wheat	cytosol	45.6	41.91
TraesCS7A01G524400.1	Wheat	cytosol	45.2	41.54
TraesCSU01G173200.1	Wheat	cytosol	43.2	41.54
TraesCS7D01G513300.1	Wheat	cytosol	43.6	40.07
Zm00001d046625_P001	Maize	cytosol	47.2	39.86
HORVU7Hr1G116460.1	Barley	cytosol	44.4	39.78
HORVU7Hr1G116400.2	Barley	cytosol	44.4	39.78
TraesCSU01G173100.1	Wheat	cytosol	44.0	39.01
CDY31791	Canola	extracellular, plasma membrane	8.8	27.16

Protein Annotations

EnsemblPlants:PGSC0003DMT400015906	EnsemblPlantsGene:PGSC0003DMG400006217	EntrezGene:102595029	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PFscan:PS50004
PGSC:PGSC0003DMG400006217	PRINTS:PR01217	RefSeq:XP_006356574.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562
UniParc:UPI0002953A7E	UniProt:M1A6T0	MapMan:35.2	:	:	:

Description

C2 domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006217]

Coordinates

chr10:-:42108080..42111048

Molecular Weight (calculated)

27171.7 Da

IEP (calculated)

8.635

GRAVY (calculated)

-0.607

Length

250 amino acids

Sequence
(BLAST)

001: MSIPYGIQGQ LLEVTVVACN KLKDTEWISR QDPYVCLEYG SSKFRTRTCT DGGKNPTFQE KFVFTLIEGL REINVVVWNS NTVNSDDLIG NGKVQLQKVL
101: SQGFDDTAWP LQTKKGRHAG EVRLIMHYAN ANKPATSHAQ SGPPYVTPTP GSYPYSVAPP HVASHPPPSG YPAPSPYSTA PPPSAYYPAS PYPTVPPPSA
201: AYHTASPYPP QSAAYPSPYS SAAYPPQPYP PQGYSYPPGQ YPGAYPPRSH

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.