CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49277	Canola	cytosol	97.62	93.54
CDX75404	Canola	cytosol, extracellular, nucleus	89.29	87.21
Bra017628.1-P	Field mustard	cytosol	90.48	87.02
CDX76264	Canola	cytosol	82.94	86.72
AT4G34150.1	Thale cress	cytosol	83.33	85.02
CDY57743	Canola	cytosol	76.59	80.75
VIT_03s0180g00030.t01	Wine grape	cytosol	59.92	61.13
CDY31792	Canola	cytosol	15.08	58.46
Os06t0638900-01	Rice	cytosol, plasma membrane	23.81	57.69
PGSC0003DMT400066559	Potato	cytosol	53.57	57.45
KRH77964	Soybean	cytosol	58.33	56.54
Solyc01g107740.2.1	Tomato	cytosol	52.38	55.46
KRH27566	Soybean	cytosol	56.35	55.04
PGSC0003DMT400015906	Potato	cytosol	53.17	53.6
GSMUA_Achr4P09410_001	Banana	cytosol	50.79	52.46
Solyc10g050060.1.1	Tomato	cytosol	51.59	52.0
TraesCSU01G173200.1	Wheat	cytosol	47.62	46.15
TraesCS7B01G441800.1	Wheat	cytosol	49.6	45.96
TraesCS7B01G441900.1	Wheat	cytosol	49.6	45.96
TraesCS7D01G513300.1	Wheat	cytosol	49.21	45.59
TraesCS7A01G524400.1	Wheat	cytosol	49.21	45.59
PGSC0003DMT400077661	Potato	cytosol	36.11	44.61
OQU76760	Sorghum	cytosol	49.21	44.6
TraesCSU01G173100.1	Wheat	cytosol	49.6	44.33
HORVU7Hr1G116460.1	Barley	cytosol	46.83	42.29
HORVU7Hr1G116400.2	Barley	cytosol	46.83	42.29
GSMUA_Achr3P19730_001	Banana	mitochondrion	46.43	42.24
Zm00001d046625_P001	Maize	cytosol	49.6	42.23
CDY31791	Canola	extracellular, plasma membrane	11.11	34.57

Protein Annotations

EnsemblPlants:CDX72452	EnsemblPlantsGene:GSBRNA2T00099964001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PFscan:PS50004	PRINTS:PR01217
ProteinID:CDX72452	ProteinID:CDX72452.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0004EE3BA6
MapMan:35.2	:	:	:	:	:

Description

BnaC07g44740D

Coordinates

chrLK031796:+:1314707..1316916

Molecular Weight (calculated)

27366.9 Da

IEP (calculated)

8.611

GRAVY (calculated)

-0.708

Length

252 amino acids

Sequence
(BLAST)

001: MSGIQGQILE VTVVGCQKLK DTEWFSRQDP YVVLEYSGTR HRTRTCTDGG KKAVFQEKFM FTLLEGLRDL KVAVWNSNTL STDDFIGNAT IQLQKVLSQG
101: YDDCTWTLQT KTGRFAGEVR LILHYAGAKK QNYGSAPSAP PYAPQVPQYS APPAPSPYSS PPYSGPSPYP QGQYSQPQSA YPPASAYPPP PSTAYPPGPS
201: AYPPGPSAYP PGPSAYPPPP PSSAYPPPPY PPQPSPYYPQ GPYPGQYPPP TY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.