Factsheet for TraesCSU01G173200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G441900.1	Wheat	cytosol	97.31	93.01
TraesCS7A01G524400.1	Wheat	cytosol	95.0	90.81
TraesCS7D01G513300.1	Wheat	cytosol	87.31	83.46
TraesCSU01G173100.1	Wheat	cytosol	88.46	81.56
Os06t0638900-01	Rice	cytosol, plasma membrane	28.85	72.12
HORVU7Hr1G116460.1	Barley	cytosol	75.77	70.61
HORVU7Hr1G116400.2	Barley	cytosol	75.77	70.61
Zm00001d046625_P001	Maize	cytosol	63.08	55.41
OQU76760	Sorghum	cytosol	58.08	54.32
KRH77964	Soybean	cytosol	48.46	48.46
KRH27566	Soybean	cytosol	47.69	48.06
CDX72452	Canola	cytosol	46.15	47.62
Bra017628.1-P	Field mustard	cytosol	46.92	46.56
VIT_03s0180g00030.t01	Wine grape	cytosol	44.23	46.56
CDY49277	Canola	cytosol	46.92	46.39
PGSC0003DMT400066559	Potato	cytosol	41.54	45.96
AT4G34150.1	Thale cress	cytosol	43.46	45.75
Bra011500.1-P	Field mustard	cytosol	45.38	45.74
CDX75404	Canola	cytosol, extracellular, nucleus	44.62	44.96
Bra034611.1-P	Field mustard	cytosol	41.54	44.81
CDX76264	Canola	cytosol	41.15	44.4
CDY57743	Canola	cytosol	40.77	44.35
Solyc01g107740.2.1	Tomato	cytosol	40.38	44.12
Solyc10g050060.1.1	Tomato	cytosol	41.92	43.6
PGSC0003DMT400015906	Potato	cytosol	41.54	43.2
GSMUA_Achr3P19730_001	Banana	mitochondrion	43.85	41.16
VIT_18s0001g09970.t01	Wine grape	cytosol	46.54	40.6
CDY31792	Canola	cytosol	9.62	38.46
PGSC0003DMT400077661	Potato	cytosol	30.0	38.24
CDY31791	Canola	extracellular, plasma membrane	6.54	20.99

Protein Annotations

EnsemblPlants:TraesCSU01G173200.1	EnsemblPlantsGene:TraesCSU01G173200	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PFscan:PS50004	SEG:seg
SMART:SM00239	SUPFAM:SSF49562	TIGR:cd00030	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrUn:-:260053577..260056969

Molecular Weight (calculated)

28776.7 Da

IEP (calculated)

8.847

GRAVY (calculated)

-0.872

Length

260 amino acids

Sequence
(BLAST)

001: MSIQGQLLEV RVTGCRKLRD TEFFSRQDPY VIVEYANTKL RTRTCTDGGR NPSFDEKFHI PLIEGLRELS INVWNSNTIN TDDFIGSCRV PLNKVLTSGY
101: DDSSWPLQTR HMKSAGEVKL IMHFDVSAMK NKMAGKTSGQ YAPSPYGASS ASYPAPSAYA AAPPPHQAYP APSHAPYPAP SAYSTPPPQQ PYPTPPPQQP
201: YPQQGGPPTS HPPQPYGQPY PPQPYGQPYP PQPYGQQPYP PQPYGQPYPP YPGAYPPRPY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.