Factsheet for Bra011500.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75404	Canola	cytosol, extracellular, nucleus	98.45	98.45
Bra034611.1-P	Field mustard	cytosol	82.17	87.97
AT4G34150.1	Thale cress	cytosol	80.62	84.21
Bra017628.1-P	Field mustard	cytosol	84.5	83.21
VIT_03s0180g00030.t01	Wine grape	cytosol	56.98	59.51
PGSC0003DMT400066559	Potato	cytosol	53.1	58.3
Solyc01g107740.2.1	Tomato	cytosol	52.33	56.72
KRH77964	Soybean	cytosol	56.98	56.54
Os06t0638900-01	Rice	cytosol, plasma membrane	22.48	55.77
PGSC0003DMT400015906	Potato	cytosol	52.71	54.4
KRH27566	Soybean	cytosol	53.1	53.1
Solyc10g050060.1.1	Tomato	cytosol	51.16	52.8
GSMUA_Achr4P09410_001	Banana	cytosol	47.67	50.41
TraesCSU01G173200.1	Wheat	cytosol	45.74	45.38
PGSC0003DMT400077661	Potato	cytosol	35.66	45.1
TraesCS7B01G441800.1	Wheat	cytosol	47.29	44.85
TraesCS7B01G441900.1	Wheat	cytosol	47.29	44.85
TraesCS7A01G524400.1	Wheat	cytosol	46.9	44.49
TraesCS7D01G513300.1	Wheat	cytosol	46.51	44.12
TraesCSU01G173100.1	Wheat	cytosol	46.9	42.91
OQU76760	Sorghum	cytosol	45.74	42.45
HORVU7Hr1G116460.1	Barley	cytosol	45.74	42.29
HORVU7Hr1G116400.2	Barley	cytosol	45.74	42.29
GSMUA_Achr3P19730_001	Banana	mitochondrion	44.96	41.88
Zm00001d046625_P001	Maize	cytosol	46.51	40.54

Protein Annotations

EnsemblPlants:Bra011500.1	EnsemblPlants:Bra011500.1-P	EnsemblPlantsGene:Bra011500	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PFscan:PS50004
PRINTS:PR01217	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI00025458D1	UniProt:M4D4U3
MapMan:35.2	:	:	:	:	:

Description

AT4G34150 (E=2e-070) | C2 domain-containing protein

Coordinates

chrA01:-:1932361..1934224

Molecular Weight (calculated)

28298.1 Da

IEP (calculated)

7.567

GRAVY (calculated)

-0.711

Length

258 amino acids

Sequence
(BLAST)

001: MSMMTMGIQG QLLEVTVVGC QKLKDTEWFS RQDPYVVLEY SGARHQTRTC TDGGKNAVFQ EKFMFTLLEG LKDLKVAVWN SNTLSTDDFI GNATIQLQKV
101: LSQGYDDCTW TLQTKTGRYA GEVRLILHYA GAKNQHHHGS APSAPPYAPQ VPHYSAPPSP SPYSSPPYSG PSLYPQVQYS QPQSAYPPAS PYPPQPYAYP
201: PPPSTSAYPP GPSAYPPGPS AYPPPPPSST YPPPPYPPQP SPYYPQGPYQ GQYPPPPY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.