Factsheet for Bra017628.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72452	Canola	cytosol	87.02	90.48
CDY49277	Canola	cytosol	88.55	88.21
Bra034611.1-P	Field mustard	cytosol	78.24	85.06
Bra011500.1-P	Field mustard	cytosol	83.21	84.5
AT4G34150.1	Thale cress	cytosol	75.95	80.57
VIT_03s0180g00030.t01	Wine grape	cytosol	58.4	61.94
PGSC0003DMT400066559	Potato	cytosol	52.67	58.72
Os06t0638900-01	Rice	cytosol, plasma membrane	23.28	58.65
Solyc01g107740.2.1	Tomato	cytosol	51.53	56.72
KRH77964	Soybean	cytosol	56.11	56.54
KRH27566	Soybean	cytosol	54.58	55.43
GSMUA_Achr4P09410_001	Banana	cytosol	50.38	54.1
PGSC0003DMT400015906	Potato	cytosol	51.15	53.6
Solyc10g050060.1.1	Tomato	cytosol	49.24	51.6
TraesCSU01G173200.1	Wheat	cytosol	46.56	46.92
TraesCS7B01G441800.1	Wheat	cytosol	48.47	46.69
TraesCS7B01G441900.1	Wheat	cytosol	48.47	46.69
OQU76760	Sorghum	cytosol	48.47	45.68
TraesCS7A01G524400.1	Wheat	cytosol	47.33	45.59
TraesCS7D01G513300.1	Wheat	cytosol	46.95	45.22
GSMUA_Achr3P19730_001	Banana	mitochondrion	47.33	44.77
TraesCSU01G173100.1	Wheat	cytosol	47.33	43.97
PGSC0003DMT400077661	Potato	cytosol	33.59	43.14
HORVU7Hr1G116460.1	Barley	cytosol	45.04	42.29
HORVU7Hr1G116400.2	Barley	cytosol	45.04	42.29
Zm00001d046625_P001	Maize	cytosol	47.33	41.89

Protein Annotations

EnsemblPlants:Bra017628.1	EnsemblPlants:Bra017628.1-P	EnsemblPlantsGene:Bra017628	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PFscan:PS50004
PRINTS:PR01217	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI00025411F4	UniProt:M4DM96
MapMan:35.2	:	:	:	:	:

Description

AT4G34150 (E=1e-070) | C2 domain-containing protein

Coordinates

chrA03:+:29407623..29409635

Molecular Weight (calculated)

28479.2 Da

IEP (calculated)

8.337

GRAVY (calculated)

-0.687

Length

262 amino acids

Sequence
(BLAST)

001: MSTMSGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYS GTRHRTRTCT DGGKNAVFQE KFMFTLLEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQGYDDCTWT LQTKTGRFAG EVRLILHYAG AKKQNYGSVP SAPPYAPQVP QYSAPPAPSP YSSPPYSGPS PYPQGQYSQP QSAYPPVSAY PPQPSAYPPP
201: PSTAYPPAPS AYPPGPSAYP PGPSAYPPPP PSSAYPPPPY PPQPSPYYPQ GPYPGQYPPP PY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.