Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31792 | Canola | cytosol | 21.15 | 33.85 |
| OQU76760 | Sorghum | cytosol | 81.73 | 30.58 |
| TraesCSU01G173200.1 | Wheat | cytosol | 72.12 | 28.85 |
| PGSC0003DMT400066559 | Potato | cytosol | 63.46 | 28.09 |
| Zm00001d046625_P001 | Maize | cytosol | 79.81 | 28.04 |
| TraesCS7B01G441900.1 | Wheat | cytosol | 72.12 | 27.57 |
| TraesCS7B01G441800.1 | Wheat | cytosol | 72.12 | 27.57 |
| TraesCS7D01G513300.1 | Wheat | cytosol | 71.15 | 27.21 |
| TraesCS7A01G524400.1 | Wheat | cytosol | 71.15 | 27.21 |
| HORVU7Hr1G116400.2 | Barley | cytosol | 72.12 | 26.88 |
| HORVU7Hr1G116460.1 | Barley | cytosol | 72.12 | 26.88 |
| TraesCSU01G173100.1 | Wheat | cytosol | 72.12 | 26.6 |
| Solyc01g107740.2.1 | Tomato | cytosol | 60.58 | 26.47 |
| VIT_03s0180g00030.t01 | Wine grape | cytosol | 62.5 | 26.32 |
| Solyc10g050060.1.1 | Tomato | cytosol | 60.58 | 25.2 |
| PGSC0003DMT400015906 | Potato | cytosol | 60.58 | 25.2 |
| KRH27566 | Soybean | cytosol | 62.5 | 25.19 |
| AT4G34150.1 | Thale cress | cytosol | 59.62 | 25.1 |
| KRH77964 | Soybean | cytosol | 62.5 | 25.0 |
| Bra034611.1-P | Field mustard | cytosol | 57.69 | 24.9 |
| CDX76264 | Canola | cytosol | 56.73 | 24.48 |
| CDY57743 | Canola | cytosol | 55.77 | 24.27 |
| GSMUA_Achr3P19730_001 | Banana | mitochondrion | 64.42 | 24.19 |
| CDX72452 | Canola | cytosol | 57.69 | 23.81 |
| Bra017628.1-P | Field mustard | cytosol | 58.65 | 23.28 |
| CDY49277 | Canola | cytosol | 58.65 | 23.19 |
| CDX75404 | Canola | cytosol, extracellular, nucleus | 55.77 | 22.48 |
| Bra011500.1-P | Field mustard | cytosol | 55.77 | 22.48 |
| VIT_18s0001g09970.t01 | Wine grape | cytosol | 57.69 | 20.13 |
| PGSC0003DMT400077661 | Potato | cytosol | 30.77 | 15.69 |
| CDY31791 | Canola | extracellular, plasma membrane | 7.69 | 9.88 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:35.2 | UniProt:A0A0P0WZH3 | ProteinID:BAS98786.1 | InterPro:C2_dom | InterPro:C2_domain_sf |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009409 | GO:GO:0009506 | GO:GO:0009628 | InterPro:IPR000008 | InterPro:IPR035892 |
| EnsemblPlantsGene:Os06g0638900 | EnsemblPlants:Os06t0638900-01 | PFAM:PF00168 | PFscan:PS50004 | PANTHER:PTHR10024 | PANTHER:PTHR10024:SF345 |
| SMART:SM00239 | SUPFAM:SSF49562 | UniParc:UPI0000E128C8 | : | : | : |
Description
Similar to calcium-binding protein. (Os06t0638900-01)
Coordinates
chr6:-:25963878..25967328
Molecular Weight (calculated)
12069.4 Da
IEP (calculated)
7.440
GRAVY (calculated)
-0.326
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIQGQILEV RVTGCRKLRD TEFFTRQDPY VCIEYATNKF RTRTCTDGGR NPTFDEKFHI PLIEGLRELT VTVWNSNTLT HDDFIGNGRF VDLNYAHLVI
101: TVLK
101: TVLK
001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY
Arabidopsis Description
AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.