CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72452	Canola	cytosol	93.54	97.62
Bra017628.1-P	Field mustard	cytosol	88.21	88.55
CDX75404	Canola	cytosol, extracellular, nucleus	85.93	87.6
CDX76264	Canola	cytosol	79.85	87.14
AT4G34150.1	Thale cress	cytosol	80.23	85.43
CDY57743	Canola	cytosol	74.14	81.59
VIT_03s0180g00030.t01	Wine grape	cytosol	57.79	61.54
CDY31792	Canola	cytosol	15.21	61.54
PGSC0003DMT400066559	Potato	cytosol	52.85	59.15
Os06t0638900-01	Rice	cytosol, plasma membrane	23.19	58.65
KRH77964	Soybean	cytosol	57.41	58.08
Solyc01g107740.2.1	Tomato	cytosol	51.71	57.14
KRH27566	Soybean	cytosol	54.75	55.81
GSMUA_Achr4P09410_001	Banana	cytosol	50.57	54.51
PGSC0003DMT400015906	Potato	cytosol	51.71	54.4
Solyc10g050060.1.1	Tomato	cytosol	50.19	52.8
TraesCSU01G173200.1	Wheat	cytosol	46.39	46.92
TraesCS7B01G441900.1	Wheat	cytosol	48.29	46.69
TraesCS7B01G441800.1	Wheat	cytosol	48.29	46.69
TraesCS7D01G513300.1	Wheat	cytosol	47.91	46.32
TraesCS7A01G524400.1	Wheat	cytosol	47.91	46.32
OQU76760	Sorghum	cytosol	47.91	45.32
TraesCSU01G173100.1	Wheat	cytosol	48.29	45.04
PGSC0003DMT400077661	Potato	cytosol	34.6	44.61
HORVU7Hr1G116460.1	Barley	cytosol	46.01	43.37
HORVU7Hr1G116400.2	Barley	cytosol	46.01	43.37
GSMUA_Achr3P19730_001	Banana	mitochondrion	45.63	43.32
Zm00001d046625_P001	Maize	cytosol	48.29	42.91
CDY31791	Canola	extracellular, plasma membrane	10.65	34.57

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.2	UniProt:A0A078IH28	InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlants:CDY49277
ProteinID:CDY49277	ProteinID:CDY49277.1	EnsemblPlantsGene:GSBRNA2T00092692001	InterPro:IPR000008	InterPro:IPR035892	PFAM:PF00168
PRINTS:PR01217	PFscan:PS50004	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	SMART:SM00239	SUPFAM:SSF49562
UniParc:UPI0004EE6B6B	SEG:seg	:	:	:	:

Description

BnaA03g50900DBnaA03g50900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IH28]

Coordinates

chrLK032822:+:53290..55659

Molecular Weight (calculated)

28490.3 Da

IEP (calculated)

8.342

GRAVY (calculated)

-0.661

Length

263 amino acids

Sequence
(BLAST)

001: MSTMSGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYS GTRHRTRTCT DGGKNAVFQE KFMFTLLEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQGYDDCTWT LQTKTGRFAG EVRLILHYAG AKKQNYGSAP SAPPYAPQVP QYSAPPAPSP YSSPPYAGPS PYPQGQYSQP QSAYPPVSAY PPQPSAYPPP
201: PSTAYPPAPS AYPPGPSAYP PGPSAFPPPP PSSAAYPPPP YPPQPSPYYP QGPYPGQYPP PPY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.