CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76264	Canola	cytosol	88.7	87.97
Bra034611.1-P	Field mustard	cytosol	88.28	87.55
CDX72452	Canola	cytosol	80.75	76.59
CDY49277	Canola	cytosol	81.59	74.14
CDX75404	Canola	cytosol, extracellular, nucleus	79.5	73.64
AT4G34150.1	Thale cress	cytosol	75.31	72.87
CDY31792	Canola	cytosol	15.9	58.46
VIT_03s0180g00030.t01	Wine grape	cytosol	59.41	57.49
Os06t0638900-01	Rice	cytosol, plasma membrane	24.27	55.77
PGSC0003DMT400066559	Potato	cytosol	53.97	54.89
Solyc01g107740.2.1	Tomato	cytosol	53.14	53.36
PGSC0003DMT400015906	Potato	cytosol	53.97	51.6
KRH77964	Soybean	cytosol	54.81	50.38
Solyc10g050060.1.1	Tomato	cytosol	51.88	49.6
KRH27566	Soybean	cytosol	52.72	48.84
GSMUA_Achr4P09410_001	Banana	cytosol	48.95	47.95
GSMUA_Achr3P19730_001	Banana	mitochondrion	47.28	40.79
TraesCSU01G173200.1	Wheat	cytosol	44.35	40.77
OQU76760	Sorghum	cytosol	47.28	40.65
TraesCS7B01G441800.1	Wheat	cytosol	45.61	40.07
TraesCS7B01G441900.1	Wheat	cytosol	45.61	40.07
TraesCS7A01G524400.1	Wheat	cytosol	44.77	39.34
PGSC0003DMT400077661	Potato	cytosol	33.47	39.22
TraesCS7D01G513300.1	Wheat	cytosol	43.51	38.24
Zm00001d046625_P001	Maize	cytosol	46.44	37.5
TraesCSU01G173100.1	Wheat	cytosol	43.93	37.23
HORVU7Hr1G116460.1	Barley	cytosol	41.84	35.84
HORVU7Hr1G116400.2	Barley	cytosol	41.84	35.84
CDY31791	Canola	extracellular, plasma membrane	10.04	29.63

Protein Annotations

EnsemblPlants:CDY57743	EnsemblPlantsGene:GSBRNA2T00022593001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PFscan:PS50004	ProteinID:CDY57743
ProteinID:CDY57743.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0004EE938E	UniProt:A0A078IZB1
MapMan:35.2	:	:	:	:	:

Description

BnaC03g77080DBnaC03g77080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZB1]

Coordinates

chrLK033600:-:47905..50227

Molecular Weight (calculated)

26324.8 Da

IEP (calculated)

8.355

GRAVY (calculated)

-0.644

Length

239 amino acids

Sequence
(BLAST)

001: MSMMAGIQGQ VLEVTVVGCQ KLKDTEWFSR QDPYVVLEYS STRHRTRTCT DGGKNAVFQE KFMFTMLEGL RDLKVAVWNS NTLSTDDLIG NATIKLQKAL
101: SEGYDDCTWT LQSKNGRYAG EVRLILHYAA AKKQNYGSAQ LAPPYAPQVP HYSAPYSGPS LYPQVQYSQP QSAYPPASAY PHQPSAYPPP SASAYPPAPS
201: AYPPGPSAYP PPPSSTYPPQ QSPYYPQGPY PGQYPPPPY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.