CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, nucleus

Predictor Summary:

extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011500.1-P	Field mustard	cytosol	98.45	98.45
CDX72452	Canola	cytosol	87.21	89.29
CDX76264	Canola	cytosol	80.62	86.31
CDY49277	Canola	cytosol	87.6	85.93
AT4G34150.1	Thale cress	cytosol	79.07	82.59
CDY57743	Canola	cytosol	73.64	79.5
VIT_03s0180g00030.t01	Wine grape	cytosol	56.98	59.51
CDY31792	Canola	cytosol	14.73	58.46
PGSC0003DMT400066559	Potato	cytosol	53.1	58.3
Solyc01g107740.2.1	Tomato	cytosol	52.33	56.72
Os06t0638900-01	Rice	cytosol, plasma membrane	22.48	55.77
KRH77964	Soybean	cytosol	56.2	55.77
PGSC0003DMT400015906	Potato	cytosol	52.71	54.4
Solyc10g050060.1.1	Tomato	cytosol	51.55	53.2
KRH27566	Soybean	cytosol	52.71	52.71
GSMUA_Achr4P09410_001	Banana	cytosol	46.51	49.18
PGSC0003DMT400077661	Potato	cytosol	35.66	45.1
TraesCSU01G173200.1	Wheat	cytosol	44.96	44.62
TraesCS7B01G441800.1	Wheat	cytosol	46.51	44.12
TraesCS7B01G441900.1	Wheat	cytosol	46.51	44.12
TraesCS7A01G524400.1	Wheat	cytosol	46.12	43.75
TraesCS7D01G513300.1	Wheat	cytosol	45.74	43.38
TraesCSU01G173100.1	Wheat	cytosol	46.12	42.2
OQU76760	Sorghum	cytosol	45.35	42.09
HORVU7Hr1G116460.1	Barley	cytosol	45.35	41.94
HORVU7Hr1G116400.2	Barley	cytosol	45.35	41.94
GSMUA_Achr3P19730_001	Banana	mitochondrion	44.57	41.52
Zm00001d046625_P001	Maize	cytosol	46.12	40.2
CDY31791	Canola	extracellular, plasma membrane	10.85	34.57

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.2	UniProt:A0A068F711	ProteinID:AID60147.1	InterPro:C2_dom	InterPro:C2_domain_sf
EnsemblPlants:CDX75404	ProteinID:CDX75404	ProteinID:CDX75404.1	EnsemblPlantsGene:GSBRNA2T00121290001	InterPro:IPR000008	InterPro:IPR035892
PFAM:PF00168	PRINTS:PR01217	PFscan:PS50004	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	SMART:SM00239
SUPFAM:SSF49562	UniParc:UPI0004A888B0	SEG:seg	:	:	:

Description

BnaA01g02980DBnaA01g02980D protein [Source:UniProtKB/TrEMBL;Acc:A0A068F711]

Coordinates

chrLK031804:+:961057..963167

Molecular Weight (calculated)

28273.0 Da

IEP (calculated)

7.117

GRAVY (calculated)

-0.670

Length

258 amino acids

Sequence
(BLAST)

001: MSMMTMGIQG QLLEVTVVGC QKLKDTEWFS RQDPYVVLEY SGARHQTRTC TDGGKNAVFQ EKFMFTLLEG LKDLKVAVWN SNTLSTDDFI GNATIQLQKV
101: LSQGYDDCTW TLQTKTGRYA GEVRLILHYA GVTNQHHHGS APSAPPYAPQ VPHYSAPPSP SPFSSPPYSG PSLYPQVQYS QPQSAYPPAS PYPPQPYAYP
201: PPPSTSAYPP GPSAYPPGSS AYPPPPPSST YPPPPYPPQP SPYYPQGPYQ GQYPPPPY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.