CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27566	Soybean	cytosol	77.69	78.29
VIT_03s0180g00030.t01	Wine grape	cytosol	60.38	63.56
Os06t0638900-01	Rice	cytosol, plasma membrane	25.0	62.5
PGSC0003DMT400066559	Potato	cytosol	55.77	61.7
Solyc01g107740.2.1	Tomato	cytosol	54.62	59.66
CDX72452	Canola	cytosol	56.54	58.33
CDY49277	Canola	cytosol	58.08	57.41
Bra011500.1-P	Field mustard	cytosol	56.54	56.98
AT4G34150.1	Thale cress	cytosol	53.85	56.68
CDX75404	Canola	cytosol, extracellular, nucleus	55.77	56.2
Bra017628.1-P	Field mustard	cytosol	56.54	56.11
PGSC0003DMT400015906	Potato	cytosol	53.85	56.0
Bra034611.1-P	Field mustard	cytosol	51.54	55.6
Solyc10g050060.1.1	Tomato	cytosol	53.46	55.6
CDX76264	Canola	cytosol	51.15	55.19
CDY57743	Canola	cytosol	50.38	54.81
GSMUA_Achr4P09410_001	Banana	cytosol	50.77	54.1
PGSC0003DMT400077661	Potato	cytosol	38.08	48.53
TraesCSU01G173200.1	Wheat	cytosol	48.46	48.46
TraesCS7B01G441800.1	Wheat	cytosol	50.0	47.79
TraesCS7B01G441900.1	Wheat	cytosol	50.0	47.79
VIT_18s0001g09970.t01	Wine grape	cytosol	54.62	47.65
TraesCS7A01G524400.1	Wheat	cytosol	49.23	47.06
TraesCS7D01G513300.1	Wheat	cytosol	48.08	45.96
TraesCSU01G173100.1	Wheat	cytosol	49.23	45.39
CDY31792	Canola	cytosol	11.15	44.62
OQU76760	Sorghum	cytosol	46.92	43.88
Zm00001d046625_P001	Maize	cytosol	49.62	43.58
GSMUA_Achr3P19730_001	Banana	mitochondrion	45.77	42.96
HORVU7Hr1G116460.1	Barley	cytosol	45.77	42.65
HORVU7Hr1G116400.2	Barley	cytosol	45.77	42.65
CDY31791	Canola	extracellular, plasma membrane	8.85	28.4

Protein Annotations

EMBL:ACUP02000686	EnsemblPlants:KRH77964	EnsemblPlantsGene:GLYMA_01G244500	EntrezGene:100778230	Gene3D:2.60.40.150	InterPro:C2_dom
InterPro:C2_domain_sf	InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168
PFscan:PS50004	ProteinID:KRH77963.1	ProteinID:KRH77964	ProteinID:KRH77964.1	SEG:seg	SMART:SM00239
SUPFAM:SSF49562	UniParc:UPI0001BA85DC	UniProt:I1JB05	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr1:-:56688657..56690577

Molecular Weight (calculated)

28252.1 Da

IEP (calculated)

8.372

GRAVY (calculated)

-0.540

Length

260 amino acids

Sequence
(BLAST)

001: MSSITGIQGQ PLEVTVVSCS KLKDTEWISR QDPYVCVEYG STKFRTRTCT DGGKNPVFQE KFIFPLIEGL RELNVLVWNS NTLTLDDFIG SGKIQLHKVL
101: SQGFDDSAWP LQTKTGRYAG EVKVILHYAI ANHQRHKSVS SHAPSAPPYV ATTTPPVPSS YSTSYPPPPS ATSYPPPPSY HTTGSYSYPP PPPPVASTVS
201: YPLPPTAYPP YSSHPPSSYP PQPSSYPPPP SYPPPASAYP PPPYPPPAGY PPGIYPPPPY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.