Factsheet for PGSC0003DMT400077661

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015906	Potato	cytosol	88.24	72.0
Solyc10g050060.1.1	Tomato	cytosol	85.29	69.6
PGSC0003DMT400066559	Potato	cytosol	55.88	48.51
VIT_03s0180g00030.t01	Wine grape	cytosol	55.39	45.75
KRH77964	Soybean	cytosol	48.53	38.08
CDX72452	Canola	cytosol	44.61	36.11
Bra034611.1-P	Field mustard	cytosol	42.16	35.68
Bra011500.1-P	Field mustard	cytosol	45.1	35.66
KRH27566	Soybean	cytosol	45.1	35.66
CDX75404	Canola	cytosol, extracellular, nucleus	45.1	35.66
AT4G34150.1	Thale cress	cytosol	43.14	35.63
CDX76264	Canola	cytosol	41.67	35.27
CDY49277	Canola	cytosol	44.61	34.6
GSMUA_Achr4P09410_001	Banana	cytosol	40.69	34.02
Bra017628.1-P	Field mustard	cytosol	43.14	33.59
CDY57743	Canola	cytosol	39.22	33.47
GSMUA_Achr3P19730_001	Banana	mitochondrion	44.12	32.49
Os06t0638900-01	Rice	cytosol, plasma membrane	15.69	30.77
TraesCSU01G173200.1	Wheat	cytosol	38.24	30.0
OQU76760	Sorghum	cytosol	40.69	29.86
TraesCS7A01G524400.1	Wheat	cytosol	39.71	29.78
TraesCS7B01G441800.1	Wheat	cytosol	39.22	29.41
TraesCS7B01G441900.1	Wheat	cytosol	39.22	29.41
Zm00001d046625_P001	Maize	cytosol	41.67	28.72
TraesCS7D01G513300.1	Wheat	cytosol	37.25	27.94
HORVU7Hr1G116460.1	Barley	cytosol	37.25	27.24
HORVU7Hr1G116400.2	Barley	cytosol	37.25	27.24
TraesCSU01G173100.1	Wheat	cytosol	37.25	26.95
CDY31791	Canola	extracellular, plasma membrane	9.8	24.69
CDY31792	Canola	cytosol	1.47	4.62

Protein Annotations

EnsemblPlants:PGSC0003DMT400077661	EnsemblPlantsGene:PGSC0003DMG400030217	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PGSC:PGSC0003DMG400030217	SEG:seg
SUPFAM:SSF49562	UniParc:UPI000295B694	UniProt:M1CYQ7	MapMan:35.2	:	:

Description

C2 domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030217]

Coordinates

chr10:-:41787200..41789562

Molecular Weight (calculated)

22191.8 Da

IEP (calculated)

9.371

GRAVY (calculated)

-0.657

Length

204 amino acids

Sequence
(BLAST)

001: MDFKARSVYG GKNPTFQEKF VFSLIEGLRE INVVVWKSNT VNSDDLIGSG KFQLQKVLSQ GFDDTAWPLQ TKKGRHAGEV QLIMHYANAN KPAASHAQSG
101: PPYVTPTPGS YPYSVAPPHV ASHPTPSGYP APFPYSTTPP PSAFYPASPY PTVPSPPAAY HPASHYPTQS AAYPSPYSSP TYPPQPYPPQ GYSYPPGQYP
201: PRSH

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.