Factsheet for TraesCSU01G173100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G513300.1	Wheat	cytosol	95.39	98.9
TraesCS7B01G441800.1	Wheat	cytosol	88.3	91.54
TraesCS7A01G524400.1	Wheat	cytosol	86.17	89.34
TraesCSU01G173200.1	Wheat	cytosol	81.56	88.46
HORVU7Hr1G116460.1	Barley	cytosol	81.56	82.44
HORVU7Hr1G116400.2	Barley	cytosol	81.56	82.44
Os06t0638900-01	Rice	cytosol, plasma membrane	26.6	72.12
Zm00001d046625_P001	Maize	cytosol	62.06	59.12
OQU76760	Sorghum	cytosol	58.16	58.99
CDX72452	Canola	cytosol	44.33	49.6
KRH77964	Soybean	cytosol	45.39	49.23
CDY49277	Canola	cytosol	45.04	48.29
AT4G34150.1	Thale cress	cytosol	42.2	48.18
KRH27566	Soybean	cytosol	43.62	47.67
PGSC0003DMT400066559	Potato	cytosol	39.72	47.66
VIT_03s0180g00030.t01	Wine grape	cytosol	41.49	47.37
Bra017628.1-P	Field mustard	cytosol	43.97	47.33
Bra011500.1-P	Field mustard	cytosol	42.91	46.9
Bra034611.1-P	Field mustard	cytosol	40.07	46.89
CDX76264	Canola	cytosol	39.72	46.47
CDX75404	Canola	cytosol, extracellular, nucleus	42.2	46.12
Solyc01g107740.2.1	Tomato	cytosol	38.65	45.8
PGSC0003DMT400015906	Potato	cytosol	39.01	44.0
Solyc10g050060.1.1	Tomato	cytosol	39.01	44.0
CDY57743	Canola	cytosol	37.23	43.93
GSMUA_Achr3P19730_001	Banana	mitochondrion	41.84	42.6
VIT_18s0001g09970.t01	Wine grape	cytosol	43.97	41.61
CDY31792	Canola	cytosol	8.87	38.46
PGSC0003DMT400077661	Potato	cytosol	26.95	37.25
CDY31791	Canola	extracellular, plasma membrane	6.03	20.99

Protein Annotations

EnsemblPlants:TraesCSU01G173100.1	EnsemblPlantsGene:TraesCSU01G173100	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PFscan:PS50004	SEG:seg
SMART:SM00239	SUPFAM:SSF49562	TIGR:cd00030	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrUn:-:260048593..260051985

Molecular Weight (calculated)

31116.4 Da

IEP (calculated)

8.496

GRAVY (calculated)

-0.850

Length

282 amino acids

Sequence
(BLAST)

001: MSIQGQLLEV RVTGCRKLRD TEFFSRQDPY VIVEYANTKL RTRTCTDGGR NPSFDEKFHI PLIEGLRELS INVWNSNTIN TDDFIGSCRV PLNKVLTSGY
101: DDSSWPLQTR HMKFPDTEVN LCRSAGEVKL IMHFDVSAMK NKMAGKTSGQ YAPSPYGASS ASYPAPSAYA AAPPPHQAYP APSHAPYPAP SAYSTPPPQQ
201: PYPTPPPQQP YPQQGGPPTS HPPQPYGQPY PPQPYGQPYP PQPYGQQPYP PQPYGQPYPP PSAAQSPYPP APYPGAYPPR PY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.