Factsheet for VIT_18s0001g09970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0180g00030.t01	Wine grape	cytosol	52.68	63.56
Os06t0638900-01	Rice	cytosol, plasma membrane	20.13	57.69
KRH27566	Soybean	cytosol	47.99	55.43
KRH77964	Soybean	cytosol	47.65	54.62
GSMUA_Achr4P09410_001	Banana	cytosol	43.29	52.87
TraesCSU01G173200.1	Wheat	cytosol	40.6	46.54
TraesCS7B01G441800.1	Wheat	cytosol	41.95	45.96
TraesCS7B01G441900.1	Wheat	cytosol	41.95	45.96
GSMUA_Achr3P19730_001	Banana	mitochondrion	42.28	45.49
TraesCS7D01G513300.1	Wheat	cytosol	41.28	45.22
TraesCS7A01G524400.1	Wheat	cytosol	40.6	44.49
TraesCSU01G173100.1	Wheat	cytosol	41.61	43.97
OQU76760	Sorghum	cytosol	38.93	41.73
Zm00001d046625_P001	Maize	cytosol	41.28	41.55
HORVU7Hr1G116400.2	Barley	cytosol	37.25	39.78
HORVU7Hr1G116460.1	Barley	cytosol	37.25	39.78

Protein Annotations

EntrezGene:100252428	wikigene:100252428	Gene3D:2.60.40.150	MapMan:35.2	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CBI19477	ProteinID:CBI19477.3	UniProt:E0CPR4	EMBL:FN595227	InterPro:IPR000008	InterPro:IPR035892
EntrezGene:LOC100252428	wikigene:LOC100252428	PFAM:PF00168	PFscan:PS50004	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345
SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI00019852FD	ArrayExpress:VIT_18s0001g09970	EnsemblPlantsGene:VIT_18s0001g09970	EnsemblPlants:VIT_18s0001g09970.t01
RefSeq:XP_002283001	RefSeq:XP_002283001.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:8350811..8352434

Molecular Weight (calculated)

32354.6 Da

IEP (calculated)

6.899

GRAVY (calculated)

-0.614

Length

298 amino acids

Sequence
(BLAST)

001: MSISGIQGHS LEVTVVGCSN LRDTEWISRQ DPYVCLEYGN FRHQTKTCTD GGKNPSFQEK FICTLIEGLR ELNVVVWNSN TLTADDFIGS GKIQLHKVLS
101: QGYDDTAWPI QGKYGRYSGE VRFILYYPNA NNKTATRLAP SVPSYATPNS ALSPIYSYDT APPPLPVAPY PAATTAYSAP PYPPATSYSA PSPYTTYSPS
201: SSYPPSQPLA GYPQTCPPSG YPSQTFPPPP QPLTSQPYPP PPQPLNSQPY PPPPQPPASH PYPSPPQAPA SQAYPPPPQA PAYYPSAQYP AVYPPPPY

Best Arabidopsis Sequence Match ( AT1G63220.1 )
(BLAST)

001: MPHGTLEVVL VSAKGLEDAD FLNNMDPYVQ LTCRTQDQKS NVAEGMGTTP EWNETFIFTV SEGTTELKAK IFDKDVGTED DAVGEATIPL EPVFVEGSIP
101: PTAYNVVKDE EYKGEIWVAL SFKPSENRSR GMDEESYGGW KNSEASY

Arabidopsis Description

C2 domain-containing protein At1g63220 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8S6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.