Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- plastid 1
- endoplasmic reticulum 1
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os06t0638900-01 | Rice | cytosol, plasma membrane | 24.19 | 64.42 |
PGSC0003DMT400066559 | Potato | cytosol | 48.74 | 57.45 |
Solyc01g107740.2.1 | Tomato | cytosol | 48.01 | 55.88 |
VIT_03s0180g00030.t01 | Wine grape | cytosol | 49.1 | 55.06 |
PGSC0003DMT400015906 | Potato | cytosol | 47.65 | 52.8 |
Solyc10g050060.1.1 | Tomato | cytosol | 47.65 | 52.8 |
GSMUA_Achr4P09410_001 | Banana | cytosol | 45.49 | 51.64 |
Bra034611.1-P | Field mustard | cytosol | 42.24 | 48.55 |
CDX76264 | Canola | cytosol | 41.88 | 48.13 |
Bra017628.1-P | Field mustard | cytosol | 44.77 | 47.33 |
CDY57743 | Canola | cytosol | 40.79 | 47.28 |
AT4G34150.1 | Thale cress | cytosol | 41.52 | 46.56 |
CDX72452 | Canola | cytosol | 42.24 | 46.43 |
KRH27566 | Soybean | cytosol | 42.96 | 46.12 |
KRH77964 | Soybean | cytosol | 42.96 | 45.77 |
CDY49277 | Canola | cytosol | 43.32 | 45.63 |
Bra011500.1-P | Field mustard | cytosol | 41.88 | 44.96 |
CDX75404 | Canola | cytosol, extracellular, nucleus | 41.52 | 44.57 |
OQU76760 | Sorghum | cytosol | 44.4 | 44.24 |
PGSC0003DMT400077661 | Potato | cytosol | 32.49 | 44.12 |
TraesCS7B01G441800.1 | Wheat | cytosol | 43.32 | 44.12 |
TraesCS7B01G441900.1 | Wheat | cytosol | 43.32 | 44.12 |
TraesCSU01G173200.1 | Wheat | cytosol | 41.16 | 43.85 |
TraesCS7A01G524400.1 | Wheat | cytosol | 42.96 | 43.75 |
CDY31792 | Canola | cytosol | 10.11 | 43.08 |
TraesCS7D01G513300.1 | Wheat | cytosol | 41.88 | 42.65 |
VIT_18s0001g09970.t01 | Wine grape | cytosol | 45.49 | 42.28 |
Zm00001d046625_P001 | Maize | cytosol | 45.13 | 42.23 |
TraesCSU01G173100.1 | Wheat | cytosol | 42.6 | 41.84 |
HORVU7Hr1G116460.1 | Barley | cytosol | 39.35 | 39.07 |
HORVU7Hr1G116400.2 | Barley | cytosol | 39.35 | 39.07 |
CDY31791 | Canola | extracellular, plasma membrane | 7.58 | 25.93 |
Protein Annotations
Gene3D:2.60.40.150 | MapMan:35.2 | InterPro:C2_dom | InterPro:C2_domain_sf | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016740 |
EnsemblPlantsGene:GSMUA_Achr3G19730_001 | EnsemblPlants:GSMUA_Achr3P19730_001 | EnsemblPlants:GSMUA_Achr3T19730_001 | InterPro:IPR000008 | InterPro:IPR035892 | UniProt:M0SG39 |
PFAM:PF00168 | PFscan:PS50004 | PANTHER:PTHR10024 | PANTHER:PTHR10024:SF345 | SMART:SM00239 | SUPFAM:SSF49562 |
UniParc:UPI000295BD5C | SEG:seg | : | : | : | : |
Description
retrotransposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G19730_001]
Coordinates
chr3:+:21053151..21055536
Molecular Weight (calculated)
30672.4 Da
IEP (calculated)
9.099
GRAVY (calculated)
-0.491
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTTRFVTWR SPLTLFLDSC RKLRTNSPSS LSLSLVMSIQ GQLLEVTVVG CNKLKDTEWI SRQDPYVILE YATTKFRTRT CTDGGRNPSF QEKTALSLIE
101: GLREISVSVW NKNTVSHDDF IGSGRVQLSK VLAQGYDDSC WSIQSRSGRY SGEVKLIMHY ANAGKAEKPA KSATPSSYAP SAPPYNPAPQ YASPYMPPKA
201: VDSFSYPPAA YPPAGYPQVP DPALYQPAIY PPPLLQQQYP PTYPPTQTYL PLPPYPPPPG QPCYPPAYPG VYPPPPY
101: GLREISVSVW NKNTVSHDDF IGSGRVQLSK VLAQGYDDSC WSIQSRSGRY SGEVKLIMHY ANAGKAEKPA KSATPSSYAP SAPPYNPAPQ YASPYMPPKA
201: VDSFSYPPAA YPPAGYPQVP DPALYQPAIY PPPLLQQQYP PTYPPTQTYL PLPPYPPPPG QPCYPPAYPG VYPPPPY
001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY
Arabidopsis Description
AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.