Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0638900-01 | Rice | cytosol, plasma membrane | 33.85 | 21.15 |
| CDY57743 | Canola | cytosol | 58.46 | 15.9 |
| CDX76264 | Canola | cytosol | 58.46 | 15.77 |
| AT4G34150.1 | Thale cress | cytosol | 58.46 | 15.38 |
| CDY49277 | Canola | cytosol | 61.54 | 15.21 |
| CDX72452 | Canola | cytosol | 58.46 | 15.08 |
| CDX75404 | Canola | cytosol, extracellular, nucleus | 58.46 | 14.73 |
| GSMUA_Achr4P09410_001 | Banana | cytosol | 50.77 | 13.52 |
| PGSC0003DMT400066559 | Potato | cytosol | 46.15 | 12.77 |
| Solyc01g107740.2.1 | Tomato | cytosol | 46.15 | 12.61 |
| VIT_03s0180g00030.t01 | Wine grape | cytosol | 47.69 | 12.55 |
| PGSC0003DMT400015906 | Potato | cytosol | 47.69 | 12.4 |
| Solyc10g050060.1.1 | Tomato | cytosol | 46.15 | 12.0 |
| KRH77964 | Soybean | cytosol | 44.62 | 11.15 |
| KRH27566 | Soybean | cytosol | 41.54 | 10.47 |
| GSMUA_Achr3P19730_001 | Banana | mitochondrion | 43.08 | 10.11 |
| TraesCSU01G173200.1 | Wheat | cytosol | 38.46 | 9.62 |
| TraesCS7B01G441800.1 | Wheat | cytosol | 38.46 | 9.19 |
| TraesCS7B01G441900.1 | Wheat | cytosol | 38.46 | 9.19 |
| TraesCSU01G173100.1 | Wheat | cytosol | 38.46 | 8.87 |
| TraesCS7D01G513300.1 | Wheat | cytosol | 36.92 | 8.82 |
| OQU76760 | Sorghum | cytosol | 36.92 | 8.63 |
| HORVU7Hr1G116460.1 | Barley | cytosol | 36.92 | 8.6 |
| HORVU7Hr1G116400.2 | Barley | cytosol | 36.92 | 8.6 |
| TraesCS7A01G524400.1 | Wheat | cytosol | 33.85 | 8.09 |
| Zm00001d046625_P001 | Maize | cytosol | 35.38 | 7.77 |
| CDY31791 | Canola | extracellular, plasma membrane | 3.08 | 2.47 |
| PGSC0003DMT400077661 | Potato | cytosol | 4.62 | 1.47 |
Protein Annotations
| EnsemblPlants:CDY31792 | EnsemblPlantsGene:GSBRNA2T00050466001 | PANTHER:PTHR10024 | PANTHER:PTHR10024:SF345 | ProteinID:CDY31792 | ProteinID:CDY31792.1 |
| SUPFAM:SSF49562 | UniParc:UPI0004EE07A6 | UniProt:A0A078H2P6 | MapMan:35.2 | : | : |
Description
BnaC01g27480DBnaC01g27480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2P6]
Coordinates
chrLK032279:-:315877..316635
Molecular Weight (calculated)
7687.2 Da
IEP (calculated)
7.517
GRAVY (calculated)
-0.312
Length
65 amino acids
Sequence
(BLAST)
(BLAST)
1: MSKMSGIEGQ ILEVTVVGCQ KLKDIDWFSR QNPYVVLEYS NTTVPNLHRW WKEPNVSREF FVHFA
001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY
Arabidopsis Description
AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.