Factsheet for VIT_03s0180g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066559	Potato	cytosol	71.26	74.89
Solyc01g107740.2.1	Tomato	cytosol	70.04	72.69
PGSC0003DMT400015906	Potato	cytosol	65.18	64.4
Solyc10g050060.1.1	Tomato	cytosol	63.97	63.2
Os06t0638900-01	Rice	cytosol, plasma membrane	26.32	62.5
KRH27566	Soybean	cytosol	63.97	61.24
Bra034611.1-P	Field mustard	cytosol	59.11	60.58
KRH77964	Soybean	cytosol	63.56	60.38
CDX76264	Canola	cytosol	58.7	60.17
CDX72452	Canola	cytosol	61.13	59.92
CDY57743	Canola	cytosol	57.49	59.41
Bra017628.1-P	Field mustard	cytosol	61.94	58.4
AT4G34150.1	Thale cress	cytosol	57.89	57.89
CDY49277	Canola	cytosol	61.54	57.79
Bra011500.1-P	Field mustard	cytosol	59.51	56.98
CDX75404	Canola	cytosol, extracellular, nucleus	59.51	56.98
GSMUA_Achr4P09410_001	Banana	cytosol	56.28	56.97
PGSC0003DMT400077661	Potato	cytosol	45.75	55.39
VIT_18s0001g09970.t01	Wine grape	cytosol	63.56	52.68
GSMUA_Achr3P19730_001	Banana	mitochondrion	55.06	49.1
CDY31792	Canola	cytosol	12.55	47.69
TraesCSU01G173200.1	Wheat	cytosol	46.56	44.23
TraesCS7B01G441800.1	Wheat	cytosol	48.58	44.12
TraesCS7B01G441900.1	Wheat	cytosol	48.58	44.12
OQU76760	Sorghum	cytosol	49.39	43.88
TraesCS7A01G524400.1	Wheat	cytosol	48.18	43.75
TraesCS7D01G513300.1	Wheat	cytosol	46.96	42.65
Zm00001d046625_P001	Maize	cytosol	50.2	41.89
TraesCSU01G173100.1	Wheat	cytosol	47.37	41.49
HORVU7Hr1G116400.2	Barley	cytosol	45.34	40.14
HORVU7Hr1G116460.1	Barley	cytosol	45.34	40.14
CDY31791	Canola	extracellular, plasma membrane	10.93	33.33

Protein Annotations

EntrezGene:100241815	wikigene:100241815	Gene3D:2.60.40.150	MapMan:35.2	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CBI40279	ProteinID:CBI40279.3	UniProt:D7UC14	EMBL:FN596754	InterPro:IPR000008	InterPro:IPR035892
EntrezGene:LOC100241815	wikigene:LOC100241815	PFAM:PF00168	PRINTS:PR01217	PFscan:PS50004	PANTHER:PTHR10024
PANTHER:PTHR10024:SF345	SMART:SM00239	SUPFAM:SSF49562	TIGR:TC68752	UniParc:UPI0001982DFF	ArrayExpress:VIT_03s0180g00030
EnsemblPlantsGene:VIT_03s0180g00030	EnsemblPlants:VIT_03s0180g00030.t01	unigene:Vvi.9264	RefSeq:XP_002285315	RefSeq:XP_002285315.1	SEG:seg

Description

No Description!

Coordinates

chr3:+:5962649..5966620

Molecular Weight (calculated)

26928.5 Da

IEP (calculated)

8.019

GRAVY (calculated)

-0.564

Length

247 amino acids

Sequence
(BLAST)

001: MSISGIQGQL LEVTVVGCNK LKDTEWISRQ DPYVCLEYGS TKFRTRTCTD GGKNPTFQEK FVFTLIEGLR EVNAVVWNSN TLTYDDFIGS GKIQLQKVLS
101: QGYDDTAWPL QTKTGRHAGE VRLILHYANA RKPETSFAPS APPYVAPPAP QVSLYSAPPP VTAGPYPSAA TAYPATFPYP SYPPNSGAYP TSSYPPPQPS
201: AYPPQPYPPH SAYPPAPYPP PSGYPPPPQA SPYHPPGHYP GLYPPPY

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.