CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034611.1-P	Field mustard	cytosol	99.59	99.59
CDY57743	Canola	cytosol	87.97	88.7
CDX72452	Canola	cytosol	86.72	82.94
CDX75404	Canola	cytosol, extracellular, nucleus	86.31	80.62
CDY49277	Canola	cytosol	87.14	79.85
AT4G34150.1	Thale cress	cytosol	79.25	77.33
VIT_03s0180g00030.t01	Wine grape	cytosol	60.17	58.7
CDY31792	Canola	cytosol	15.77	58.46
PGSC0003DMT400066559	Potato	cytosol	56.02	57.45
Os06t0638900-01	Rice	cytosol, plasma membrane	24.48	56.73
Solyc01g107740.2.1	Tomato	cytosol	54.77	55.46
PGSC0003DMT400015906	Potato	cytosol	54.36	52.4
Solyc10g050060.1.1	Tomato	cytosol	53.53	51.6
KRH77964	Soybean	cytosol	55.19	51.15
GSMUA_Achr4P09410_001	Banana	cytosol	49.38	48.77
KRH27566	Soybean	cytosol	51.87	48.45
OQU76760	Sorghum	cytosol	48.55	42.09
GSMUA_Achr3P19730_001	Banana	mitochondrion	48.13	41.88
PGSC0003DMT400077661	Potato	cytosol	35.27	41.67
TraesCS7B01G441800.1	Wheat	cytosol	46.47	41.18
TraesCS7B01G441900.1	Wheat	cytosol	46.47	41.18
TraesCSU01G173200.1	Wheat	cytosol	44.4	41.15
TraesCS7D01G513300.1	Wheat	cytosol	46.06	40.81
TraesCS7A01G524400.1	Wheat	cytosol	45.64	40.44
TraesCSU01G173100.1	Wheat	cytosol	46.47	39.72
Zm00001d046625_P001	Maize	cytosol	48.55	39.53
HORVU7Hr1G116460.1	Barley	cytosol	43.98	37.99
HORVU7Hr1G116400.2	Barley	cytosol	43.98	37.99
CDY31791	Canola	extracellular, plasma membrane	9.96	29.63

Protein Annotations

EnsemblPlants:CDX76264	EnsemblPlantsGene:GSBRNA2T00126622001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR10024	PANTHER:PTHR10024:SF345	PFAM:PF00168	PFscan:PS50004	ProteinID:CDX76264
ProteinID:CDX76264.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0004EF2531	MapMan:35.2

Description

BnaA08g11360D

Coordinates

chrLK031807:+:22237..24313

Molecular Weight (calculated)

26567.1 Da

IEP (calculated)

8.355

GRAVY (calculated)

-0.655

Length

241 amino acids

Sequence
(BLAST)

001: MSMMAGIQGQ VLEVTVVGCQ KLKDTEWFSR QDPYVVLEYS STRHRTRTCT DGGKNAVFQE KFMFTMLEGL RDLKVVVWNS NTLSTDDFIG NATIKLQKAL
101: SEGYDDCTWT LQGKNGRYAG EVRLILHYAA AKKQNYGSAQ LAPHYAPQVP HYSAPYSGPS LYPQVQYSQP QSAYPPASAY PPQPSAYPPP PSASSYPPAP
201: SAYPPGPSAY PPPPPSSTYP PQQSPYYPQG PYPGQYPPPP Y

Best Arabidopsis Sequence Match ( AT4G34150.1 )
(BLAST)

001: MSMMAGIQGQ ILEVTVVGCQ KLKDTEWFSR QDPYVVLEYG GRSHRTRTCT DGGKNAVFQE KFIFTLIEGL RDLKVAVWNS NTLSTDDFIG NATIQLQKVL
101: SQEYDDCTWT LQSKTGRFAG EVQLLLHYAG AKKHNYGSAP SAPYAPHVPQ YSAPPSASPY STAPPYSGPS LYPQVQQYPQ PSGYPPASGY PPQPSAYPPP
201: STSGYPPIPS AYPPPPPSSA YPPQPYPPQP SYYPQGPYPG QYPPPPY

Arabidopsis Description

AT4g34150/F28A23_90 [Source:UniProtKB/TrEMBL;Acc:Q945K9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.